View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18254_low_6 (Length: 308)
Name: NF18254_low_6
Description: NF18254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18254_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 7289889 - 7289593
Alignment:
| Q |
1 |
aaataggtgcaacatacaaaacaacaaaacattcatgagttaagtacaagtggtttagctatgcaaagatggataaaaatttgcaacatccaataatttt |
100 |
Q |
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| T |
7289889 |
aaataggtgcaacatacaaaacaacaaaacattcatgagttaagtacaagtggtttagctatgcaaagatggataaaaatttgcaacatccaataatttt |
7289790 |
T |
|
| Q |
101 |
taattattatatttatctacacaatggactttgaggatgatgagaacaagcgagttaattttctaaagaacaataactcatcatttcttcaatgccaatt |
200 |
Q |
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| T |
7289789 |
taattattatatttatctacacaatggactttgaggatgatgagaacaaacgagttaattttctaaagaacaataactcatcatttcttcaatgccaatt |
7289690 |
T |
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| Q |
201 |
gatctacattcttgtttgaacaatatccttattctttccatgatcttcaaccatcttcaaaatacactcaaaagtagagacttcacaaggaatcctc |
297 |
Q |
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| T |
7289689 |
gatctacattcttgtttgaacactatccttattctttccatgatcttcaaccatcttcaaaatacactcaaaagtagagacttcacaaagaatcctc |
7289593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 66 - 297
Target Start/End: Original strand, 1196757 - 1196989
Alignment:
| Q |
66 |
aagatggataaaaatttgcaacatccaataatttttaattattatatttatctacacaatggactttgaggatgatgagaacaagcgagttaattttcta |
165 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
1196757 |
aagatggataaaaatttgcaacatccaataatatt-aattattatatttatctacacaatggactttgaggatgatgagaacaagcaagttgattttcta |
1196855 |
T |
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| Q |
166 |
aagaacaataactcatcatttcttcaatgccaattgatctacattcttg-tttgaaca-atatccttattctttccatgatcttcaaccatcttcaaaat |
263 |
Q |
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|||||||||||| |||||| |||||||||| |||||||||||||||||| |||||| | | |||||||||||||||||||||||||||||||||||||| |
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| T |
1196856 |
aagaacaataacccatcatctcttcaatgctaattgatctacattcttgatttgaaaacttgtccttattctttccatgatcttcaaccatcttcaaaat |
1196955 |
T |
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| Q |
264 |
acactcaaaagtagagacttcacaaggaatcctc |
297 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| |
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| T |
1196956 |
actctcaaaagtagagacttcacaaggaatcctc |
1196989 |
T |
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