View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18254_low_9 (Length: 241)
Name: NF18254_low_9
Description: NF18254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18254_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 29178548 - 29178430
Alignment:
| Q |
1 |
aacaatattatcctgagtttacttaatcctttagattaaatgttcatgactttttt-cctttgtcttaattattagaacagtaataattttgtttgtggg |
99 |
Q |
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| T |
29178548 |
aacaatattatcctgagtttacttaatcctttagattaaatgttcatgactttttttcctttgtcttaattattagaacagtaataattttgtttgtggg |
29178449 |
T |
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| Q |
100 |
aaaacagcggaaataaatg |
118 |
Q |
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||||||||||||||||||| |
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| T |
29178448 |
aaaacagcggaaataaatg |
29178430 |
T |
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Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 29178371 - 29178307
Alignment:
| Q |
177 |
cctcttccatcaattgttgagatgtcttctaatttggctacccataacagtttctttttcatttc |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29178371 |
cctcttccatcaattgttgagatgtcttctaatttggccacccataacagtttctttttcatttc |
29178307 |
T |
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