View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18255_high_10 (Length: 522)
Name: NF18255_high_10
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 234 - 461
Target Start/End: Original strand, 30538626 - 30538866
Alignment:
| Q |
234 |
ttgatactactctgagctcttctcaatcccgactcactacaaacatgtcctccatgaattattgattctagaggagatcaaagaaatattttcaaccaaa |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30538626 |
ttgatactactctgagctcttctcaatcccgactcactacaaacatgtcctccatgaattattgattctagaggagatcaaagaaatattttcaaccaaa |
30538725 |
T |
|
| Q |
334 |
gagagtaatcaataacatatgtgtatcaatcctagacctca-------------ctcgataagtttcccattaaaataattcttttaaaaatcaactgac |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30538726 |
gagagtaatcaataacatatgtgtatcaatcctagacctcacatagttaacttgctcgataagtttcccattaaaataattcttttaaaaatcaactgac |
30538825 |
T |
|
| Q |
421 |
aagcatttcatttctacaacgtggaaagatatattgagaac |
461 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30538826 |
aagcatttcatttctacaatgtggaaagatatattgagaac |
30538866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 30538387 - 30538602
Alignment:
| Q |
17 |
acactttacattcaccatgaatgatagctctgtctagtgcaccatcttgcaatggtcacatcaattcgatagttaccaactccattttattttatccaga |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30538387 |
acactttacagtcaccatgaatgatagctctctctagtgcaccatcttgcaatggtcacatca-ttcgatagttaccaactccattttattctatccaga |
30538485 |
T |
|
| Q |
117 |
aactcaccggagaaaacatccaacaccttattcatagcttcttaaatataactctttatttttgaccttccatcaatcagacgttcgtccatccaaactt |
216 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30538486 |
aactcactggagaaaacatccaacaccttattcaaagcttcttaaatataactctttacttttgaccttccatcaatcagacgttcgtccatccaaactt |
30538585 |
T |
|
| Q |
217 |
cacacttatgagtgacc |
233 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
30538586 |
cacacttatgagtgacc |
30538602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University