View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18255_high_11 (Length: 521)
Name: NF18255_high_11
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Original strand, 38284684 - 38285164
Alignment:
| Q |
19 |
agtttgcggtgaaggagtacaactacaaacaaggtttgaacaacggcggcggtggagaggggttgaagttcgtggaagtggtggaggctgagcagcaagt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38284684 |
agtttgcggtgaaggagtacaactacaaacaaggtttgaacaacggcggcggcggagaggggttgaagttcgtggaagtggtggaggctgagcagcaagt |
38284783 |
T |
|
| Q |
119 |
ggtgtctgggatgaaatactatctcaacatctcagccgttgatcataatggtgttcaaagaatgtttaactctgttgtggtggttaagccgtggcttcat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38284784 |
ggtgtctgggatgaaatactatctcaacatctcagccgttgatcataatggtgttcaaagaatgtttaactctgttgtggtggttaagccgtggcttcat |
38284883 |
T |
|
| Q |
219 |
cagtacaagaaggttatccattttggtccttcatccaccttccaccaacatactactatgtaattagaatttggacttggacctaaataagtaccactac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38284884 |
cagtacaagaaggttatccattttggtccttcatccaccttccaccaacatactactatgtaattagaatttggacttggacctaaataagtaccactac |
38284983 |
T |
|
| Q |
319 |
atgtctatatggtttcttttactaga----tgcatatggcgcggtgtttgtaattgcaactgagttttttcctttcttcaattttatcaattaatnnnnn |
414 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38284984 |
atgtctatatggtttcttttactagatgcgtgcatatggcgcggtgtttgcaattgcaactgagttttttcctttcttcaattttatc---taa------ |
38285074 |
T |
|
| Q |
415 |
nntatattctctactgttttgtgtgg--tgtatatgtcaactaaaagaaatgaaacaattaacatatattctaaagtgtttactactatctgtg |
506 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
38285075 |
--tatattctctactgttttgtgtggtatatatatttcaactaaaagaaatgaaacaattaac--atatcctaaagtgtttactactatctgtg |
38285164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University