View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18255_high_12 (Length: 502)
Name: NF18255_high_12
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 9 - 460
Target Start/End: Original strand, 42527302 - 42527753
Alignment:
| Q |
9 |
tgagatgaaacacagcaagagaagtattatgaagaatgaaagtagttacacaactatttatagctagctgagcctgtacaataccatacaataggtaggc |
108 |
Q |
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| T |
42527302 |
tgagaagaaacacagcaagagaagtattatgaagaatgaaagtagttacacaactatttatagctagctgagcctgtacaataccatacaataggtaggc |
42527401 |
T |
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| Q |
109 |
aacatcatataagaagaaaatagaagctacactatgttgttacttggagtctaaggtatatatcctctatactattatcatgtaatgtaataagaagtac |
208 |
Q |
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| T |
42527402 |
aacatcatataagaagaaaatagaagctacactatgttgttacttggagtctaaggtatatatcctctatactattatcatgtaatgtaataagaagtac |
42527501 |
T |
|
| Q |
209 |
tatattttagttagctaattatgggtggcgtcaatattaagcttcctatattgtagcaatatgtgtcattatgttatggaacattacaatatatagtacg |
308 |
Q |
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| T |
42527502 |
tatattttagttagctaattatgggtggcgtcaatattaaccttcctatattatagcaatatgtgtcattatgttatggaacattacaatatatagtacg |
42527601 |
T |
|
| Q |
309 |
catgattgttcactaactatagaaaatattaataaaatgctaacttggagttacaaaataattcttaaaatagttacgaccgcgtattagttacacttac |
408 |
Q |
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| T |
42527602 |
catgattgttccctaaatatagaaaatattaataaaatgctaacttggagttacaaaataattcttaaaatagttacgaccgcgtattagttacacttac |
42527701 |
T |
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| Q |
409 |
atttgttgtcaattccttcttcaaaacatattctgtctctagctagtacact |
460 |
Q |
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| T |
42527702 |
atttgttgtcaattccttcttcaaaacatattctgtctctagctagtacact |
42527753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 201 - 460
Target Start/End: Original strand, 42519232 - 42519503
Alignment:
| Q |
201 |
agaagtactatattttagttagctaattatgggtggcgtcaatattaagcttcctatattgtagcaatatgtgtcattatgttatggaacattacaatat |
300 |
Q |
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| T |
42519232 |
agaagtattatctttttgttagctaattatgggtggagtcaatattaaccttcatagattacaacaacacatgtcattatgttatggttcattacaaaat |
42519331 |
T |
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| Q |
301 |
atagtacgcatgattgttcactaactatagaaaatattaataaaatg----ctaacttggagttacaaaataattcttaaaatagttacgaccgcgtatt |
396 |
Q |
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| T |
42519332 |
gtagtacgcgtgattattcactaaatatagaaattattaacaaactgctaactaacttggagttacaaaatacttcttaaaatagttacgaccaggtatt |
42519431 |
T |
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| Q |
397 |
agt----------tacacttacatttgttgtcaattccttcttcaaaacatattctgtctctagctagtacact |
460 |
Q |
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| T |
42519432 |
agttatatgtttctacacttacatttgttgtcaattccttcttcata--atgttctgtctctagctagtacact |
42519503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 49 - 194
Target Start/End: Original strand, 1079727 - 1079865
Alignment:
| Q |
49 |
agtagttacacaactatttatagctagctgagcctgtacaataccatacaataggtaggcaacatcatataagaagaaaatagaagctacactatgttgt |
148 |
Q |
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||||||||||||| |||| ||||||||||||||||||||| || | |||||||||||||||||||||||||||||| ||| | ||| || |||| ||| |
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| T |
1079727 |
agtagttacacaattattcatagctagctgagcctgtacattagcttacaataggtaggcaacatcatataagaagtaaagataagttatacta---tgt |
1079823 |
T |
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| Q |
149 |
tacttggagtctaaggtatatatcctctatactattatcatgtaat |
194 |
Q |
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| T |
1079824 |
tacttggagtctaag----ctatcttctatactagtatcatgtaat |
1079865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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