View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18255_high_20 (Length: 379)
Name: NF18255_high_20
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_high_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 8 - 246
Target Start/End: Complemental strand, 30078599 - 30078359
Alignment:
| Q |
8 |
gtattgactctaaattccctaccaaactcaagatgggaaaagttgaaaacaaaacaaaattccaactcattcttnnnnnnnnnnnnccacaaaatttaat |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30078599 |
gtattgactctaaattctctaccaaactcaagatggggaaagttgaaaacaaaacaaaattccaactcattctttctctctctctcccacaaaatttaat |
30078500 |
T |
|
| Q |
108 |
gcacactaactccctcattgagatttgaaacttgaatctctccacaaaaatccagtattaaatgctacagatgaaactctcacccaccctttacccct-- |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30078499 |
gcacactaactccctcattgagatttgaaacttgaatctctccacaaaaatccagtattaaatgctacagatgaaactctcacccaccctttacccctaa |
30078400 |
T |
|
| Q |
206 |
nnnnnnnnntgccatcctaacccccctaagtttctccctca |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
30078399 |
aaaaaaaaatgccatcctaacccccctaagtttctccctca |
30078359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 376
Target Start/End: Complemental strand, 30070898 - 30070862
Alignment:
| Q |
340 |
acatagtttcttcaccaaccttggcctttgctactcc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30070898 |
acatagtttcttcaccaaccttggccttggctactcc |
30070862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 376
Target Start/End: Complemental strand, 30078266 - 30078230
Alignment:
| Q |
340 |
acatagtttcttcaccaaccttggcctttgctactcc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30078266 |
acatagtttcttcaccaaccttggccttggctactcc |
30078230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University