View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18255_high_26 (Length: 337)
Name: NF18255_high_26
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 45378643 - 45378964
Alignment:
| Q |
1 |
tcttatttagtttgtttcatgattaggtcaatttttatgaaaggttatttgtttccttgcctaaagcataagccacgtgtgcacaaaatttaacaacaca |
100 |
Q |
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| T |
45378643 |
tcttatttagtttgtttcatgattaggtcaatttttatgaaaggttatttgtttccttgcctaaagcataagccacgtgtgcacaaaatttaacaacaca |
45378742 |
T |
|
| Q |
101 |
agcatgttgccgacatgtggcgattaatctgcttcatcaatccctatctgatgatcatgaaagtacataggtacatacatcagtttggaatttagcttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45378743 |
agcatgttgccgacatgtggcgattaatctgcttcatcaatccctatctgatgatcatgaaagtacataggtacatacatcagtttggaatttagcttga |
45378842 |
T |
|
| Q |
201 |
aaaactcagtattagtttttaacaaatttatcgttttgtaaaatatatgcaccttgttatattattggttttgattctttattgcagctaataacattaa |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
45378843 |
aaaactcagtattagtttttaacaaatttatcattttgtaaaatatatg---cttgttatattattggttttgattgtttattgcagctaataatattaa |
45378939 |
T |
|
| Q |
301 |
tatcgactttgtgacatttctctcg |
325 |
Q |
| |
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| T |
45378940 |
tatcgactttgtgacattactctcg |
45378964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 33087295 - 33087462
Alignment:
| Q |
41 |
aaggttatttgtttccttgcctaaagcataagccacgtgtgcacaaaatttaacaacacaagcatgttgccgacatgtggcgattaatctgcttcatcaa |
140 |
Q |
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| T |
33087295 |
aaggttatttgcttccttgcccaaagcacaagc-acgtgtgcacaaaatggaacagcacaagcatgttgccgacatgtggcgattaatctgcttcatcaa |
33087393 |
T |
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| Q |
141 |
tccctatct--gatgatcatgaaagtacataggtacata---catcagtttggaatttagcttgaaaaa |
204 |
Q |
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||||||| | ||||||||||||||||||||||| ||| ||||||||||||||||| ||| ||||| |
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| T |
33087394 |
tccctattttatatgatcatgaaagtacataggtatatacatcatcagtttggaatttaacttaaaaaa |
33087462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 33087573 - 33087634
Alignment:
| Q |
212 |
ttagtttttaacaaatttatcgttttgtaaaatatatgcaccttgttatattattggttttgatt |
276 |
Q |
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|||||||||||||||||||| |||||||||| ||||| |||||||||||||| |||||||| |
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| T |
33087573 |
ttagtttttaacaaatttattattttgtaaaacatatg---cttgttatattattcattttgatt |
33087634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 202
Target Start/End: Complemental strand, 22819027 - 22818993
Alignment:
| Q |
168 |
taggtacatacatcagtttggaatttagcttgaaa |
202 |
Q |
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| T |
22819027 |
taggtacatacatcagtttggaatttagcatgaaa |
22818993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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