View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18255_high_28 (Length: 320)
Name: NF18255_high_28
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_high_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 33618534 - 33618839
Alignment:
| Q |
1 |
ttttgtctaaccttatctctgctggtattgttgatcgaattggtcgaagattcttgttcatatctgggggaattatgatgcttgtctgcttggtaagcga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33618534 |
ttttgtctaaccttatctctgctggtattgttgatcgaattggtcgaagattcttgttcatatctgggggaattatgatgcttgtctgcttggtaagcga |
33618633 |
T |
|
| Q |
101 |
actaaacctatctatccttttgttagctaatatattttgtgtccctatgaaatatatttttaagttgtttaacatcattgcgtcattttattcatgcagc |
200 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33618634 |
actaaacctatctatctttttgttagttaatatattttgtgtccctatgaaatatatttttaagttgtttaacatcattgcgtcattttattcatgcagc |
33618733 |
T |
|
| Q |
201 |
cgactcacttagtgggataaggcttgattattgcttttaagctatttaacattttttatttagttccacttgttactaattaaaatactttgtctcaaaa |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33618734 |
caactcacttagtgggataaggcttgattattgcttttaagctatttaacattttttatttagttccacttgttactaattaaaatactttgtctcaaca |
33618833 |
T |
|
| Q |
301 |
atgtga |
306 |
Q |
| |
|
|||||| |
|
|
| T |
33618834 |
atgtga |
33618839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 33609362 - 33609459
Alignment:
| Q |
4 |
tgtctaaccttatctctgctggtattgttgatcgaattggtcgaagattcttgttcatatctgggggaattatgatgcttgtctgcttggtaagcgaa |
101 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
33609362 |
tgtctaacgttatctctgccggtattgttgatcgatttggtcgaagattcctgttcataactgggggtattatgatgtttgtctgcttggtaagcgaa |
33609459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 33627779 - 33627851
Alignment:
| Q |
31 |
ttgatcgaattggtcgaagattcttgttcatatctgggggaattatgatgcttgtctgcttggtaagcgaact |
103 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||| ||||| ||| |||||||||||||||| ||||| |
|
|
| T |
33627779 |
ttgatcgatttggtcgaagattcttgttcattactgggggtattatcatgtttgtctgcttggtaagtgaact |
33627851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 33622758 - 33622824
Alignment:
| Q |
31 |
ttgatcgaattggtcgaagattcttgttcatatctgggggaattatgatgcttgtctgcttggtaag |
97 |
Q |
| |
|
||||| || ||||||||||||||||||||||| | ||||| |||||||| |||||||||| ||||| |
|
|
| T |
33622758 |
ttgatagatttggtcgaagattcttgttcataaccgggggtgttatgatgtttgtctgctttgtaag |
33622824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 19908102 - 19908043
Alignment:
| Q |
171 |
aacatcattgcgtcattttattcatgcagccgactc-acttagtgggataaggcttgatt |
229 |
Q |
| |
|
||||| ||||||| ||||||| |||| ||||||| | ||||||||||||||||||||||| |
|
|
| T |
19908102 |
aacattattgcgtaattttatccatgtagccgaccccacttagtgggataaggcttgatt |
19908043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 43240437 - 43240391
Alignment:
| Q |
180 |
gcgtcattttattcatgcagccgac-tcacttagtgggataaggctt |
225 |
Q |
| |
|
||||||||| ||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
43240437 |
gcgtcatttgattcatgtagccgacctcacttagtgggataaggctt |
43240391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 38900181 - 38900227
Alignment:
| Q |
180 |
gcgtcattttattcatgcagccgactcacttagtgggataaggcttg |
226 |
Q |
| |
|
||||||||| || |||| ||||||| ||||||||||||||||||||| |
|
|
| T |
38900181 |
gcgtcatttgatccatgtagccgacccacttagtgggataaggcttg |
38900227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 51811335 - 51811290
Alignment:
| Q |
181 |
cgtcattttattcatgcagccgactcacttagtgggataaggcttg |
226 |
Q |
| |
|
|||||||| || |||| ||||||| ||||||||||||||||||||| |
|
|
| T |
51811335 |
cgtcatttgatccatgtagccgacccacttagtgggataaggcttg |
51811290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University