View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18255_high_32 (Length: 288)

Name: NF18255_high_32
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18255_high_32
NF18255_high_32
[»] chr8 (2 HSPs)
chr8 (1-222)||(6348454-6348675)
chr8 (219-251)||(28249845-28249877)
[»] chr2 (2 HSPs)
chr2 (215-248)||(5935260-5935293)
chr2 (217-248)||(34951111-34951142)
[»] chr3 (2 HSPs)
chr3 (217-259)||(8735025-8735067)
chr3 (217-259)||(9087266-9087308)
[»] chr7 (1 HSPs)
chr7 (222-259)||(114376-114413)
[»] chr6 (2 HSPs)
chr6 (222-259)||(2539439-2539476)
chr6 (222-251)||(31721916-31721945)
[»] chr1 (2 HSPs)
chr1 (222-259)||(12523163-12523200)
chr1 (215-248)||(49852816-49852849)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6348675 - 6348454
Alignment:
Q  1 aattattaccttcccatgaaatgttaggattttaagtttcccctatcaagacattgtcatgctttaatttgcctttacgagtcaaagttcgtttgccact 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6348675 aattattaccttcccatgaaatgttaggaatttaagtttcccctatctagacattgtcatgctttaatttgcctttacgagtcaaagttcgtttgccact 6348576  T
Q  101 tcccttctcattctcgttttctgaattagtggtcttttatcttgaaaatgacaagattaagaaaattatcggttgtaaaaatagagaataatcattggca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  6348575 tcccttctcattctcgttttctgaattagtggtcttttatcttgaaaatgacaagattaagaaaattatcgggtgtaaaactagagaataatcattggca 6348476  T
Q  201 aagctctctgactattgagttt 222  Q
    ||||||||||||||||| ||||    
T  6348475 aagctctctgactattgggttt 6348454  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 28249877 - 28249845
Alignment:
Q  219 gttttactttttccaccctatgtctttccttgc 251  Q
    |||||||||||||||||||||| ||||||||||    
T  28249877 gttttactttttccaccctatgcctttccttgc 28249845  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 5935260 - 5935293
Alignment:
Q  215 ttgagttttactttttccaccctatgtctttcct 248  Q
    ||||||||||||||||||||||||||||||||||    
T  5935260 ttgagttttactttttccaccctatgtctttcct 5935293  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 248
Target Start/End: Complemental strand, 34951142 - 34951111
Alignment:
Q  217 gagttttactttttccaccctatgtctttcct 248  Q
    ||||||||||||||||||||||||||||||||    
T  34951142 gagttttactttttccaccctatgtctttcct 34951111  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 8735025 - 8735067
Alignment:
Q  217 gagttttactttttccaccctatgtctttccttgcacgtccta 259  Q
    |||||||||||||  ||| ||||||||||||||||||||||||    
T  8735025 gagttttacttttctcacactatgtctttccttgcacgtccta 8735067  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 9087266 - 9087308
Alignment:
Q  217 gagttttactttttccaccctatgtctttccttgcacgtccta 259  Q
    |||||||||||||  ||| ||||||||||||||||||||||||    
T  9087266 gagttttacttttctcacactatgtctttccttgcacgtccta 9087308  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 114413 - 114376
Alignment:
Q  222 ttactttttccaccctatgtctttccttgcacgtccta 259  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  114413 ttactttttccaccctatgtctttcctcgcacgcccta 114376  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 2539439 - 2539476
Alignment:
Q  222 ttactttttccaccctatgtctttccttgcacgtccta 259  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  2539439 ttactttttccaccctatgtctttcctcgcacgcccta 2539476  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 251
Target Start/End: Original strand, 31721916 - 31721945
Alignment:
Q  222 ttactttttccaccctatgtctttccttgc 251  Q
    ||||||||||||||||||||||||||||||    
T  31721916 ttactttttccaccctatgtctttccttgc 31721945  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 12523163 - 12523200
Alignment:
Q  222 ttactttttccaccctatgtctttccttgcacgtccta 259  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  12523163 ttactttttccaccctatgtctttcctcgcacgcccta 12523200  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 49852849 - 49852816
Alignment:
Q  215 ttgagttttactttttccaccctatgtctttcct 248  Q
    ||||||||||||||| ||||||||||||||||||    
T  49852849 ttgagttttacttttcccaccctatgtctttcct 49852816  T

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