View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18255_high_42 (Length: 243)
Name: NF18255_high_42
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 41964444 - 41964220
Alignment:
| Q |
1 |
atgtatcgtggagtcacaaggtactaaatcaaataggcctactattaattagattaagctttaatttcttctcctaagcttactacttaaggtgtttaaa |
100 |
Q |
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| T |
41964444 |
atgtatcgtggagtcacaaggtactaaatcaaataggcctactattaattagattaaactttaatttcttctcctaagcttactacttaaggtgtttaaa |
41964345 |
T |
|
| Q |
101 |
gagtgtcagaggcaatcgttagcatttttcatagtatatattcgtcattattttaggcatcaccaacatggaagatggcaagcaagaattggtcgagtcg |
200 |
Q |
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| T |
41964344 |
gagtgtcacatgcactcgttagcatttttcttagtatatattcgtcattattttaggcatcaccaacatggaagatggcaagcaagaattggtcgagtcg |
41964245 |
T |
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| Q |
201 |
cgggaaacaaagatctttacttagg |
225 |
Q |
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| T |
41964244 |
cgggaaacaaagatctttacttagg |
41964220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 24562189 - 24562122
Alignment:
| Q |
155 |
aggcatcaccaacatggaagatggcaagcaagaattggtcgagtcgcgggaaacaaagatctttactt |
222 |
Q |
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| T |
24562189 |
aggcatcaccaacatggaagatggcaagcaaggattggcagagttgcaggaaataaagatctatactt |
24562122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 40190513 - 40190571
Alignment:
| Q |
158 |
catcaccaacatggaagatggcaagcaagaattggtcgagtcgcgggaaacaaagatct |
216 |
Q |
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| T |
40190513 |
catcaccaacatggaagatggcaagctagaattggtagagtggctggtaataaagatct |
40190571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 28587131 - 28587083
Alignment:
| Q |
174 |
gatggcaagcaagaattggtcgagtcgcgggaaacaaagatctttactt |
222 |
Q |
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||||||||||||||||||||||||| || |||||||||||||| ||||| |
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| T |
28587131 |
gatggcaagcaagaattggtcgagttgctggaaacaaagatctatactt |
28587083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 13681321 - 13681263
Alignment:
| Q |
155 |
aggcatcaccaacatggaagatggcaagcaagaattggtcgagtcgcgggaaacaaaga |
213 |
Q |
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| T |
13681321 |
aggcatcaccaacagggtaggtggcaagcaagaattggtcgtgttgccgggaacaaaga |
13681263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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