View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18255_high_44 (Length: 237)
Name: NF18255_high_44
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_high_44 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 13886171 - 13885963
Alignment:
| Q |
14 |
gaataagaatggtgtaaattcattaggtgttccaatttttgttgatcctatcaatgatcctccatatataagagtcccttacttcatcatattgaggagc |
113 |
Q |
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| T |
13886171 |
gaataagaatggtgtaaattcattaggtgttccaatttttgttgatcctatcaatgatcctccatatataagagtcccttacttcatcatactgaggagc |
13886072 |
T |
|
| Q |
114 |
aatgaagatgagagacttatctttgacaaagataaagacaagtttgacttttacattggagatcctgatcttcttaccttccctggtatgattagaaata |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13886071 |
aatgaagatgagagacttatctttgacaaagataaagacaagtttgacttttacattggagatcctgatcttcttaccttccctggtatgattagaaata |
13885972 |
T |
|
| Q |
214 |
agtagtact |
222 |
Q |
| |
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||||||||| |
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| T |
13885971 |
agtagtact |
13885963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 14026296 - 14026088
Alignment:
| Q |
14 |
gaataagaatggtgtaaattcattaggtgttccaatttttgttgatcctatcaatgatcctccatatataagagtcccttacttcatcatattgaggagc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14026296 |
gaataagaatggtgtaaattcattaggtgttccaatttttgttgatcctatcaatgatcctccatatataagagtcccttacttcatcatactgaggagc |
14026197 |
T |
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| Q |
114 |
aatgaagatgagagacttatctttgacaaagataaagacaagtttgacttttacattggagatcctgatcttcttaccttccctggtatgattagaaata |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14026196 |
aatgaagatgagagacttatctttgacaaagataaagacaagtttgacttttacattggagatcctgatcttcttaccttccctggtatgattagaaata |
14026097 |
T |
|
| Q |
214 |
agtagtact |
222 |
Q |
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||||||||| |
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| T |
14026096 |
agtagtact |
14026088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 7686160 - 7685962
Alignment:
| Q |
14 |
gaataagaatggtgtaaattcattaggtgttccaatttttgttgatcctatcaatgatcctccatatataagagtcccttacttcatcatattgaggagc |
113 |
Q |
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|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
7686160 |
gaataagaatggtgtaaattcattgggcgttccaattttcgttgatcctatcaatgatcttccatatataagaatcccttacttcatcatattgaggagt |
7686061 |
T |
|
| Q |
114 |
aatgaagatgagagacttatctttgacaaagataaagacaagtttgacttttacattggagatcctgatcttcttaccttccctggtatgattagaaat |
212 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
7686060 |
aacgaggatgagagacttatctttgacaaagataaagacaagtttgacttttacgttggagatcctgatcttcttaccttccctggtacgattacaaat |
7685962 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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