View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18255_high_46 (Length: 218)
Name: NF18255_high_46
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_high_46 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 33416353 - 33416151
Alignment:
| Q |
1 |
aaaggatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtggcgtagctgatcactgttcggctcgtcaaatgaagttggtcatcactgtt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33416353 |
aaaggatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtggagttgctgatcactgttcggctcgtcaaatgaagttggtcatcactgtt |
33416254 |
T |
|
| Q |
101 |
ctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctgtgtttggagttgtcatggcaatcatggttgcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33416253 |
ctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctctgtttggagttgtcatggcaatcatggttgcaa |
33416154 |
T |
|
| Q |
201 |
ttg |
203 |
Q |
| |
|
||| |
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|
| T |
33416153 |
ttg |
33416151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 33410504 - 33410302
Alignment:
| Q |
1 |
aaaggatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtggcgtagctgatcactgttcggctcgtcaaatgaagttggtcatcactgtt |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33410504 |
aaaggatatcattcaactaaaaacagaaggaagaaagtggtatgtttgtggagttgctgatcactgttcggctcgtcaaatgaagttggtcatcactgtt |
33410405 |
T |
|
| Q |
101 |
ctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctgtgtttggagttgtcatggcaatcatggttgcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33410404 |
ctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctctgtttggagttgtcatggcaatcatggttgcaa |
33410305 |
T |
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| Q |
201 |
ttg |
203 |
Q |
| |
|
||| |
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|
| T |
33410304 |
ttg |
33410302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 33424406 - 33424204
Alignment:
| Q |
1 |
aaaggatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtggcgtagctgatcactgttcggctcgtcaaatgaagttggtcatcactgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33424406 |
aaaggatatcattcaactaaaaacagaaggaagaaagtggtatgtttgtggagttgctgatcactgttcggctcgtcaaatgaagttggtcatcactgtt |
33424307 |
T |
|
| Q |
101 |
ctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctgtgtttggagttgtcatggcaatcatggttgcaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33424306 |
ctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctctgtttggagttgtcatggcaatcatggttgcaa |
33424207 |
T |
|
| Q |
201 |
ttg |
203 |
Q |
| |
|
||| |
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|
| T |
33424206 |
ttg |
33424204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 33428183 - 33428385
Alignment:
| Q |
1 |
aaaggatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtggcgtagctgatcactgttcggctcgtcaaatgaagttggtcatcactgtt |
100 |
Q |
| |
|
||||||||| |||| ||||| ||||||| || ||||||||||||||||||| |||||||| ||||||| |||||||| |||||||| ||||||||||| |
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| T |
33428183 |
aaaggatattattcccctaaagactgaagaaacaaagtggtatgtttgtggcatagctgataactgttctgctcgtcacatgaagttcatcatcactgtt |
33428282 |
T |
|
| Q |
101 |
ctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctgtgtttggagttgtcatggcaatcatggttgcaa |
200 |
Q |
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||||| ||| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33428283 |
ctagcagaaagtgcccctgctccttctcttccaccttcttctgatgctcattctgttgtttcatctgtgtttggagttgtcatggcaaccatggttgcaa |
33428382 |
T |
|
| Q |
201 |
ttg |
203 |
Q |
| |
|
||| |
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|
| T |
33428383 |
ttg |
33428385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 33436558 - 33436374
Alignment:
| Q |
1 |
aaaggatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtggcgtagctgatcactgttcggctcgtcaaatgaagttggtcatcactgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||| || |||||||||||| |
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| T |
33436558 |
aaaggatatcattcaactaaaaacagaaggaagaaagtggtatgtttgtggcgtagctgatcattgttctgctcatcaaatgaaatttgtcatcactgtt |
33436459 |
T |
|
| Q |
101 |
ctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctgtgtttggagttgtcatgg |
185 |
Q |
| |
|
||||| ||||| |||||||||||||| || || || |||||| ||||||||||| |||| |||||| |||||||||||||||||| |
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| T |
33436458 |
ctagcagaaggcgcacctgctccttcccctcctccatcttctaatgctcactctattgtatcatctatgtttggagttgtcatgg |
33436374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 5219 - 5403
Alignment:
| Q |
1 |
aaaggatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtggcgtagctgatcactgttcggctcgtcaaatgaagttggtcatcactgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| ||||| |||||||||||| |
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| T |
5219 |
aaaggatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtggcgtagctgatcattgttctgctcatcaaataaagtttgtcatcactgtt |
5318 |
T |
|
| Q |
101 |
ctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctgtgtttggagttgtcatgg |
185 |
Q |
| |
|
||||| ||||| ||| |||||||||| | || || |||||| ||||||||||| |||| |||||| |||||||||| ||||||| |
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| T |
5319 |
ctagcagaaggcgcatctgctccttccactcctccatcttctaatgctcactctattgtatcatctatgtttggagtcgtcatgg |
5403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 24985137 - 24985253
Alignment:
| Q |
11 |
attcaactaaaaactgaaggaagaaagtggtatgtttgtggcgtagctgatcactgttcggctcgtcaaatgaagttggtcatcactgttctagccgaag |
110 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| ||||| || |||| || | ||||||||||||||| | ||||||| ||| |||| |||| |
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| T |
24985137 |
attcaactgaaaaccgaaggaagaaagtggtatgtatgtggaaaggcaaatcattgcgctgctcgtcaaatgaagcttgtcatcaatgtactagaagaag |
24985236 |
T |
|
| Q |
111 |
gtgcacctgctccttct |
127 |
Q |
| |
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|||||||| | |||||| |
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| T |
24985237 |
gtgcaccttcgccttct |
24985253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 24990967 - 24991083
Alignment:
| Q |
11 |
attcaactaaaaactgaaggaagaaagtggtatgtttgtggcgtagctgatcactgttcggctcgtcaaatgaagttggtcatcactgttctagccgaag |
110 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| ||||| || |||| || | ||||||||||||||| | ||||||| ||| |||| |||| |
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| T |
24990967 |
attcaactgaaaaccgaaggaagaaagtggtatgtatgtggaaaggcaaatcattgcgctgctcgtcaaatgaagcttgtcatcaatgtactagaagaag |
24991066 |
T |
|
| Q |
111 |
gtgcacctgctccttct |
127 |
Q |
| |
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|||||||| | |||||| |
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| T |
24991067 |
gtgcaccttcgccttct |
24991083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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