View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18255_high_48 (Length: 212)
Name: NF18255_high_48
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_high_48 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 33618557 - 33618375
Alignment:
| Q |
12 |
cagcagagataaggttagacaaaaggctaacagatccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttggg |
111 |
Q |
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| T |
33618557 |
cagcagagataaggttagacaaaaggctaacagatccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttggg |
33618458 |
T |
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| Q |
112 |
tgaataaaaggctacaatgttgatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatatt |
194 |
Q |
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| T |
33618457 |
tgaataaaaggctacaatattgatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatatt |
33618375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 33609380 - 33609202
Alignment:
| Q |
14 |
gcagagataaggttagacaaaaggctaacagatccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtg |
113 |
Q |
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| T |
33609380 |
gcagagataacgttagacacaaggctaacggatccaagtacaatggcggaaattaaagcgccgtcacgtcccaagcccacagaatggaagaggttaggtg |
33609281 |
T |
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| Q |
114 |
aataaaaggctacaatgttgatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgata |
192 |
Q |
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| T |
33609280 |
aatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcgata |
33609202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 46 - 195
Target Start/End: Complemental strand, 33588632 - 33588483
Alignment:
| Q |
46 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc |
145 |
Q |
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| T |
33588632 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac |
33588533 |
T |
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| Q |
146 |
tgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattg |
195 |
Q |
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| T |
33588532 |
tgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattg |
33588483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 46 - 195
Target Start/End: Complemental strand, 33595804 - 33595655
Alignment:
| Q |
46 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc |
145 |
Q |
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| T |
33595804 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac |
33595705 |
T |
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| Q |
146 |
tgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattg |
195 |
Q |
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| T |
33595704 |
tgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattg |
33595655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 46 - 195
Target Start/End: Complemental strand, 33602935 - 33602786
Alignment:
| Q |
46 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc |
145 |
Q |
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| T |
33602935 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac |
33602836 |
T |
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| Q |
146 |
tgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattg |
195 |
Q |
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| T |
33602835 |
tgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattg |
33602786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 192
Target Start/End: Complemental strand, 33627737 - 33627592
Alignment:
| Q |
47 |
ccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagct |
146 |
Q |
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| T |
33627737 |
ccaagtataatcgcagaaagtaaagaagcattgtgtcccaaccccaaagatctaaagaggttaggtgaatagaaagcaataatgttgatccctgtaactt |
33627638 |
T |
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| Q |
147 |
gttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgata |
192 |
Q |
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| T |
33627637 |
gttgaaaaaacgggattgctatcgccattaccaagtgaggtcgata |
33627592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 33563045 - 33562978
Alignment:
| Q |
128 |
atgttgatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattg |
195 |
Q |
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| T |
33563045 |
atgttgatccccgtgagttgttgaaaaagcggaatagcaactgctatcaccaagtgaggtcgatattg |
33562978 |
T |
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