View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18255_high_5 (Length: 716)
Name: NF18255_high_5
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 642; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 15 - 708
Target Start/End: Complemental strand, 25176870 - 25176177
Alignment:
| Q |
15 |
aaccaagccaaactcactcaattcaacttcaccaacaacaacaccaccttaaactataacctagtactcaacttcactgctcaaaaccctaacaaaaaac |
114 |
Q |
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| T |
25176870 |
aaccaagccaaactcactcaattcaacttcaccaacaacaacaccaccttaaactataacctagtactcaacttcactgctcaaaaccctaacaaaaaac |
25176771 |
T |
|
| Q |
115 |
tcaaaatctactacgatgtcgttgaagccaacgctttctataagggatacaatttctctgccacggatatgatcaagccattgcgcacccttcaggaaac |
214 |
Q |
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| T |
25176770 |
tcaaaatctactacgatgtcgttgaagccaacgctttctataagggatacaatttctctgccacggatatgaacaagccattgcgcacccttcaggaaac |
25176671 |
T |
|
| Q |
215 |
taaaagtgtggattaccgtatgagtgctgtttttattggtcaacatgtgatgatgcttgatcgtgatgaggttgatgagttccaagaagattacaaaact |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
25176670 |
caaaagtgtggattaccgtatgagtgctgtttttattggtcaacatgtgatgatgcttgatcgtgatgaggttgatgagtttcaagaagattacaaaaat |
25176571 |
T |
|
| Q |
315 |
gggatttttcgttttgatattaagatttattttagtataaggtttaggcttggagattttatatttggtgacaccaaagtccaagcaaaatgtgatttta |
414 |
Q |
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| T |
25176570 |
ggtatttttggtattgatattaagatttattttagtataaggtttaggcttggaaattttatatttggtgacaccaaagtccaagcaaaatgtgatctaa |
25176471 |
T |
|
| Q |
415 |
aggttcctattagttctaataatagtgggaaaatggttgatccgtttgatcccaccaagtgtgtggtggatttctgattcgcattataggtactactact |
514 |
Q |
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| T |
25176470 |
aggttcctcttagttctaataatagtgggaaaatggttgatccgtttgatcccaccaagtgtgtggtggatttctgattcgcattataggtactactact |
25176371 |
T |
|
| Q |
515 |
accatgttattaatttctaagcttgtatcacgttaatttgattgatttaatttgtatacatgttcaaaaatctaagattaatgttgtttagtacgatgac |
614 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25176370 |
accatgttattaatttctaagcttgtatcacgttaatttgattgatttaatttgtatacatgttcaaaaatctaagattaatgttgtttagtacgataac |
25176271 |
T |
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| Q |
615 |
cattttaacgaagattaatgttgtttagtattactcatttatccatcacacatcgtttctatattatccttgtatggcaagtggtcttcttctc |
708 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25176270 |
cattttaacgaagattaatgttgtttagtattactcatttatccatcacacatcgtttctatattatccttgtatggcaagtggttttcttctc |
25176177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 25237835 - 25237774
Alignment:
| Q |
72 |
aacctagtactcaacttcactgctcaaaaccctaacaaaaaactcaaaatctactacgatgt |
133 |
Q |
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||||| |||||||||||||| || | || || |||||||||||||| |||||||||||||| |
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| T |
25237835 |
aacctcgtactcaacttcacggcccgtaatccaaacaaaaaactcaacatctactacgatgt |
25237774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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