View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18255_low_1 (Length: 831)
Name: NF18255_low_1
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 621; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 16 - 798
Target Start/End: Original strand, 14426212 - 14426984
Alignment:
| Q |
16 |
atgaaccaccatgatgttattttatttacatattctcttcaatgttttaacattctcaatgatccacaaatatggtactttgatttatgaaatcaaggat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14426212 |
atgaaccaccatgatgttattttatttacatattctcttcaatgttttaacattctcaatgatccacaaatatgctactttgatttatgaaatcaaggat |
14426311 |
T |
|
| Q |
116 |
cttatcaacctcgactcgaacatatctatcactcacacacttcacaaaggaaatagttgtgttgacttcatgacaaa-gactaaagcttcttcctccttg |
214 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
14426312 |
cttatcaacctcgactggaacatatccatcactcacacacttcacgaaggaaatagttgtgttgacttcatgacaaatgactagagcttcttcctccttg |
14426411 |
T |
|
| Q |
215 |
gatttcatgatttacacatctcctccgacagacttatcaatcatcctagcaatagactgtgctggaacttggttccatatagtgtagtttttctttctca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14426412 |
gatttcatgatttacacatctcctccgacagacttatcaatcatcctagcaacagactctgctggaacttggttccatatagcgtagtttttctttctca |
14426511 |
T |
|
| Q |
315 |
tcctgcaacaataaagaataaagtaaaagggataaaattg-aaatgtaatagtttaaatgatagatacaatggaaaatggaaaaattactccaagatcat |
413 |
Q |
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| T |
14426512 |
tcctgcaacaaaaaagaataaagtaaaagggataaaattgtaaatataatagtttaaatgatagatac-------aatggaaaaaatactccaagatcat |
14426604 |
T |
|
| Q |
414 |
gtatcaatctctacgtatgtgtatagataacacaaaattgaagcctctcaagtatgaggtttggacagtcactcctcccgtctttgctccaaactaccac |
513 |
Q |
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| T |
14426605 |
gtatcaatctctatgtatgtgtatcgataacacaaaattgaagcctctcaagtatgaggtttggacagtcactcctcccgtctgtgctccaaactaccac |
14426704 |
T |
|
| Q |
514 |
tcttggcatttgtttacttaattatcctcacannnnnnngttcaaannnnnnngaagtaaagagatgggatgacaagacatccaagacaagaaaagtttc |
613 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14426705 |
tcttggcatttgtttacttaattatcctcacatttttttgttcaaatttttttgaagtaaagagatgggat-----gacatccaagacaagaaaagtttc |
14426799 |
T |
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| Q |
614 |
ataatcaaatacttggtaaaattcttaatttgtttacctcattttaaaatttgagtgcatgtttagacctgatctgtcatatatgtgattccttgtcata |
713 |
Q |
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| T |
14426800 |
ataatcaaatacttggtaaaattcttaatttgtttacctcattttaaaatttgagtgcatgtttagacctgatctgtcatatatgtgattccttgtcata |
14426899 |
T |
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| Q |
714 |
ctatattatattaaatcaatcctttggaattagaatcctcatactttatataatcaagttaaaatattttacaaaatctcaaatt |
798 |
Q |
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| T |
14426900 |
ctatattatattaaatcaatcctttggaattagaatcctcatactttatataatcaagttaaaatattttacaaaatctcgaatt |
14426984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 326 - 418
Target Start/End: Original strand, 34771122 - 34771215
Alignment:
| Q |
326 |
taaagaataaagtaaaagggataaaattg-aaatgtaatagtttaaatgatagatacaatggaaaatggaaaaattactccaagatcatgtatc |
418 |
Q |
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|||| |||||||||||||||||| | ||| |||||||||||||||||||| |||| ||| | || || |||| | ||||||| |||||||||| |
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| T |
34771122 |
taaataataaagtaaaagggatacatttgtaaatgtaatagtttaaatgaaggataaaattggaagtgaaaaagtcactccaaaatcatgtatc |
34771215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 278 - 312
Target Start/End: Complemental strand, 39361096 - 39361062
Alignment:
| Q |
278 |
ggaacttggttccatatagtgtagtttttctttct |
312 |
Q |
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| T |
39361096 |
ggaacttggttccatatagcgtagtttttctttct |
39361062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 418
Target Start/End: Original strand, 16423058 - 16423143
Alignment:
| Q |
334 |
aaagtaaaagggataaaattg-aaatgtaatagtttaaatgatagatacaatggaaaatggaaaaattactccaagatcatgtatc |
418 |
Q |
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| T |
16423058 |
aaagtgaatgggataaaattgtaaatgtaatagtttaaatgaaaaataaaattggaagtgaaaaaactactccaaaatcatgtatc |
16423143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 326 - 374
Target Start/End: Original strand, 50647115 - 50647163
Alignment:
| Q |
326 |
taaagaataaagtaaaagggataaaattgaaatgtaatagtttaaatga |
374 |
Q |
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|||| ||||||||||| ||||||||||||||| || ||||||||||||| |
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| T |
50647115 |
taaataataaagtaaatgggataaaattgaaacgtcatagtttaaatga |
50647163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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