View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18255_low_15 (Length: 459)
Name: NF18255_low_15
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Complemental strand, 19856016 - 19855587
Alignment:
| Q |
18 |
atgtcttaagctttctatggagatgaaaaaaccacttgtgtgcaaggttgttccaattccaaggacctagggctaagctaatgttagtgtttgaatttgc |
117 |
Q |
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| T |
19856016 |
atgtcttaagctttctatggagatgaaaaaaccacttgtgtgcaaggttgttccaattccaaggacctagggctaagctaatgttagtgtttgaatttgc |
19855917 |
T |
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| Q |
118 |
caaacttttgtgagaaagttggtcatggatcttgtggggtttggtttctttgctttgtttgggaaaagggtatttgcttagtagggttatgatttcatag |
217 |
Q |
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| T |
19855916 |
caaacttttgtgagaaagttgatcatggatcatgtggggtttggtttatttgctttgtttggcaaaagggtatt-gctaagtagggttatgatttcatag |
19855818 |
T |
|
| Q |
218 |
g-ttttttctatttagaatctaattttaaatgcaatttatgttttgttgttgaccgtttaggtttattagttaagtgggtgttgggagttttaatttact |
316 |
Q |
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| T |
19855817 |
ggttttttctatttagaatctaattttaaatgcaattcatgttttgttgttgaccgtttaggtttatcagtgaagtgggtgttgggagttttaatttact |
19855718 |
T |
|
| Q |
317 |
ttgaaccgttgctaattaagtagtagatgtttggttttagtccaatgtcttctttctctatatgctgtaaatgggtgcttttaatttctaatgataatca |
416 |
Q |
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| T |
19855717 |
ttgaaccgttgctaattaagtagtagatgtttggttttggtccaatgtcttctttctctatatgctgtaaatgggtgcttttaatttctaatgataatca |
19855618 |
T |
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| Q |
417 |
tgtcatgtttccttcttatctatgtgtcctt |
447 |
Q |
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| T |
19855617 |
tgtcatctttccttcttatctatgtgtcctt |
19855587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 8748640 - 8748767
Alignment:
| Q |
18 |
atgtcttaagctttctatggagatgaaaaaaccacttgtgtgcaaggttgttccaattccaaggacctagggctaagctaatgttagtgtttgaatttgc |
117 |
Q |
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|||||||| ||||||| |||||||||| |||||||||||||||||||||| || | |||||||||| |||||||||||||||||||||||| |
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| T |
8748640 |
atgtcttatgctttctgtggagatgaagaaaccacttgtgtgcaaggttg------ttgctaggacctagg-----gctaatgttagtgtttgaatttgc |
8748728 |
T |
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| Q |
118 |
caaacttttgtgagaaagttggtcatggatcttgtgggg |
156 |
Q |
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| T |
8748729 |
ttgactttcgtaagaaatttggttatggatcttgtgggg |
8748767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 32830212 - 32830085
Alignment:
| Q |
18 |
atgtcttaagctttctatggagatgaaaaaaccacttgtgtgcaaggttgttccaattccaaggacctagggctaagctaatgttagtgtttgaatttgc |
117 |
Q |
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| T |
32830212 |
atgtcttatgctttctgtggagatgaagaaaccacttctgtgcaaggttg------ttgctaggacctagg-----gctaatgttagtgtttgaatttgc |
32830124 |
T |
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| Q |
118 |
caaacttttgtgagaaagttggtcatggatcttgtgggg |
156 |
Q |
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| T |
32830123 |
ttgactttcgtaagaaatttggttatggatcttgtgggg |
32830085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 35081257 - 35081319
Alignment:
| Q |
94 |
gctaatgttagtgtttgaatttgccaaacttttgtgagaaagttggtcatggatcttgtgggg |
156 |
Q |
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|||||||||||||||||||||||| ||||| || ||||| ||||| ||| ||||||||||| |
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| T |
35081257 |
gctaatgttagtgtttgaatttgcttgactttcgtaagaaatttggttatgaatcttgtgggg |
35081319 |
T |
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