View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18255_low_16 (Length: 420)
Name: NF18255_low_16
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 3 - 410
Target Start/End: Complemental strand, 33424239 - 33423829
Alignment:
| Q |
3 |
tgtttggagttgtcatggcaaccatggttgctattgtagctatctttgcataagagaattaggaagttttatattgttattaatacaagtatttgtgtta |
102 |
Q |
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||||||||||||||||||||| ||||||||| |||| || |||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33424239 |
tgtttggagttgtcatggcaatcatggttgcaattgcagtcatctttgcatgagagacttaggaagctttatattgttattaatacaagtatttgtgtta |
33424140 |
T |
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| Q |
103 |
atcttttggcaagatacattgccatatttgtttgaattttttaaattatgaattatatggttatttatgttaatgtcattgtaatttggtcctcaatttt |
202 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33424139 |
atcttttggcaagatacattgccatatttatttgaattttttgaattatgaattatatggttatttatgttaatgtcattgtaatttggtcctcaatttt |
33424040 |
T |
|
| Q |
203 |
atatcctgttatgttttggtttgtgcatgagttctttcaaatcagattgtaactcgaactttcattaataatttattatacaaaatgtttgcttgcttct |
302 |
Q |
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| T |
33424039 |
atatcctgttatgttttggtttgtgcatgagttctttcaaatcagattgtaactctaactttcattaataatttattatacaaaatgtttgcttgcttct |
33423940 |
T |
|
| Q |
303 |
tagttcaacttaatcca---tgttgtataagacccaagagaaagcgactcaattgagatccacaatcatattgttcgtaagacccaattcaacctgacaa |
399 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33423939 |
tagttcaacttaatccatattgttgtataagacccaagagaaagcgactcaattgagatccacaatcatattgttcgtaagacccaattcaacctgacaa |
33423840 |
T |
|
| Q |
400 |
acgacgatatt |
410 |
Q |
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| T |
33423839 |
acgacgatatt |
33423829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 3 - 324
Target Start/End: Complemental strand, 33410337 - 33410019
Alignment:
| Q |
3 |
tgtttggagttgtcatggcaaccatggttgctattgtagctatctttgcataagagaattaggaagttttatattgttattaatacaagtatttgtgtta |
102 |
Q |
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||||||||||||||||||||| ||||||||| |||| || |||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33410337 |
tgtttggagttgtcatggcaatcatggttgcaattgcagtcatctttgcatgagagacttaggaagctttatattgttattaatacaagtatttgtgtta |
33410238 |
T |
|
| Q |
103 |
atcttttggcaagatacattgccatatttgtttgaattttttaaattatgaattatatggttatttatgttaat----gtcattgtaatttggtcctcaa |
198 |
Q |
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|||||||||||| ||| ||||| |||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||| |
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| T |
33410237 |
atcttttggcaatatatattgctatatttgtttgaattttt-------tgaattatatgattatttatgttaattaaagtcattgtaatttgatcctcaa |
33410145 |
T |
|
| Q |
199 |
ttttatatcctgttatgttttggtttgtgcatgag-ttctttcaaatcagattgtaactcgaactttcattaataatttattatacaaaatgtttgcttg |
297 |
Q |
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| T |
33410144 |
ttttatatcttgttatgttttggtttgttctcgagtttccttcaaatcagattgtaactctcccattcattaagaatttgttattaaaagtgttagctta |
33410045 |
T |
|
| Q |
298 |
cttcttagttcaacttaatccatgttg |
324 |
Q |
| |
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||||||| ||||| || |||||||||| |
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| T |
33410044 |
cttcttatttcaa-tttatccatgttg |
33410019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 33416186 - 33415966
Alignment:
| Q |
3 |
tgtttggagttgtcatggcaaccatggttgctattgtagctatctttgcataagagaattaggaagttttatattgttattaatacaagtatttgtgtta |
102 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| || |||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
33416186 |
tgtttggagttgtcatggcaatcatggttgcaattgcagtcatctttgcatgagagacttaggaagttttatattgttattaatacagaagtttgtgtta |
33416087 |
T |
|
| Q |
103 |
atcttttggcaagatacattgccatatttgtttgaattttttaaatt-atgaat--tatatggttatttatgttaatgtcattgtaatttggtcctcaat |
199 |
Q |
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| || ||||||| ||| ||||| ||||||||||||||||||| |||| |||||| |||||| || |||||||||||| ||||||| | | ||| || | |
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| T |
33416086 |
acctcttggcaatatatattgctatatttgtttgaattttttgaattaatgaattatatatgattctttatgttaatgatattgtaactagatccacagt |
33415987 |
T |
|
| Q |
200 |
tttatatcctgttatgttttg |
220 |
Q |
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|||||||| ||||||| |||| |
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| T |
33415986 |
tttatatcttgttatgctttg |
33415966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 33428348 - 33428457
Alignment:
| Q |
1 |
tgtgtttggagttgtcatggcaaccatggttgctattgtagctatctttgcataagagaattaggaagttttatattgttattaatacaagtatttgtgt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| || |||||||||| || |||||||| ||||||||||| |||||||||| ||||||| |
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| T |
33428348 |
tgtgtttggagttgtcatggcaaccatggttgcaattgcagtcatctttgcat----gacttaggaagctttatattgtttttaatacaagagtttgtgt |
33428443 |
T |
|
| Q |
101 |
taatcttttggcaa |
114 |
Q |
| |
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||| || ||||||| |
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| T |
33428444 |
taacctcttggcaa |
33428457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 33415913 - 33415854
Alignment:
| Q |
284 |
aaaatgtttgcttgcttcttagttcaacttaatccatgttgtataagacccaagagaaagc |
344 |
Q |
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||||||||| ||| |||||||||||||||| ||||||| || | ||||||||||||||||| |
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| T |
33415913 |
aaaatgtttccttacttcttagttcaactttatccatg-tgcaaaagacccaagagaaagc |
33415854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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