View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18255_low_19 (Length: 405)
Name: NF18255_low_19
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 75 - 334
Target Start/End: Original strand, 6694755 - 6695014
Alignment:
| Q |
75 |
ttaggtcatgatgcaattaatcgattgcaaaatggcaaagaatctataaggagaaatcaataactttcagtcactttttagtactctatccctgcataac |
174 |
Q |
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| T |
6694755 |
ttaggtcatgatgcaattaatcgattgcaaaatggcaaataatctataaggagaaatcaataactttcagtcactttttagtactctatccctgcgtaac |
6694854 |
T |
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| Q |
175 |
tgcaaagactaaaccctcgatatagatatgtcgatcacattttatgtatcatcaaatgcagaatcaagtaaataaaacaataaattcaagaaaaatcgaa |
274 |
Q |
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| T |
6694855 |
tgcaaagactaaaccctcgatatagatatgtcgatcacattttatgtatcatcaaatgcagaatcaagtaaataaaacaataaattcaagaaaaatcgaa |
6694954 |
T |
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| Q |
275 |
atgcaatttttataatagaaacaaaattgaaggaataatcaaaatcgataaacagaaaga |
334 |
Q |
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| T |
6694955 |
atgcaatttttataatagaaacaaaattgaaggaataatcataatcgataaacagaaaga |
6695014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 6694699 - 6694735
Alignment:
| Q |
19 |
aatatcattagaacaatagcaaatgacagctatatat |
55 |
Q |
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| T |
6694699 |
aatatcattagaacaatagcaaatgacagctatatat |
6694735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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