View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18255_low_22 (Length: 379)
Name: NF18255_low_22
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 5 - 361
Target Start/End: Complemental strand, 14851816 - 14851463
Alignment:
| Q |
5 |
tacttctgcaattggaagaatctctgttgaattcagaatgttagtagaagatgggtgacttttaatgtgattgtttttaaagaaaatgaaacatagagca |
104 |
Q |
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| T |
14851816 |
tacttctgcaattggaagaatctctgttgaattcagaatgttagtagaagatgggtgacttttaatttgattgtttttaaagaaaatgaaacatagagca |
14851717 |
T |
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| Q |
105 |
tactctctacttttcatagcacnnnnnnnnnataaaacnnnnnnnntaagaactttgtcatacaaactttaatttttcagtctttgacatagttttcatc |
204 |
Q |
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| T |
14851716 |
cactct--acttttcatagcactttttttt-ataaaacaaaaaaaataagaactttgtcatacaaactttaatttttcagtctttgacatagttttcatc |
14851620 |
T |
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| Q |
205 |
attagtgtaacacaaccaaagtcatgtgtgtctctcttggaattttgaggaaaatgaattatgtcagaaggatattgatccttgacatgttaatttataa |
304 |
Q |
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| T |
14851619 |
attagtgtaacacaaccaaagtcatgtgtgtctctcttggaattttgaggaaaatgaattatgtcagaaggatattgatccttgacatgttaatttataa |
14851520 |
T |
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| Q |
305 |
ttaaactaggaaaacttaacaaactt-gattaattaatcagggtctatgaagcacgaa |
361 |
Q |
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||||||||| |||||||||||||||| ||||||||||||| | ||||||||||||||| |
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| T |
14851519 |
ttaaactagcaaaacttaacaaacttagattaattaatca-gatctatgaagcacgaa |
14851463 |
T |
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