View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18255_low_23 (Length: 375)
Name: NF18255_low_23
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_low_23 |
 | |
|
| [»] scaffold0028 (2 HSPs) |
| | |
|
| [»] scaffold0482 (1 HSPs) |
| | |
|
| [»] scaffold0040 (2 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
| [»] scaffold0233 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0028 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 94787 - 95140
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
94787 |
atatagtgagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
94886 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
94887 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacg-tttttgatagctgtccaaagtc |
94985 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
94986 |
tcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgca |
95085 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
95086 |
tgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
95140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 104228 - 104581
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
104228 |
atatagtgagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
104327 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
104328 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacg-tttttgatagctgtccaaagtc |
104426 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
104427 |
tcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgca |
104526 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
104527 |
tgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
104581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 7592838 - 7592485
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7592838 |
atatagtgagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
7592739 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
7592738 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgt-ttttgatagctgtccaaagtc |
7592640 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7592639 |
tcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgca |
7592540 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7592539 |
tgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
7592485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 15173151 - 15172798
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
||||||||||||||| |||||||| |||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15173151 |
atatagtgagagagcatggaattttctttgtttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttgctta |
15173052 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
15173051 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggacacgt-ttttgatagctgtccaaagtc |
15172953 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15172952 |
tcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcgca |
15172853 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||| || ||||| |||||||||| |
|
|
| T |
15172852 |
tgagataaccagctataatgagctgtataacttgctgctcacttctgatgatgtc |
15172798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 368
Target Start/End: Complemental strand, 15202571 - 15202224
Alignment:
| Q |
17 |
tagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatga |
116 |
Q |
| |
|
||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
15202571 |
tagtgagagagcttggaatttcctttgtttgcgaagagctttgtttgtagtgatgattttcacttagagagatat---cttgcaaaactcttgcttatga |
15202475 |
T |
|
| Q |
117 |
ccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtctca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
15202474 |
ccttcaaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagttgttggacacgttttt-gatagctgtccaaagtctca |
15202376 |
T |
|
| Q |
217 |
attgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatga |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
15202375 |
attgatttctcttttcttctttaaaatagccagaacgttctatgaatgttctttctgatttgtctggctttaaaagcactgttgctttgcttgcgcatga |
15202276 |
T |
|
| Q |
317 |
gttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
| ||||||||||||||||| |||||||||||| |||||||| |||||||||| |
|
|
| T |
15202275 |
gataaccagctgtaatgagttgtataacttgctgcccacttctgatgatgtc |
15202224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 127 - 368
Target Start/End: Original strand, 4118893 - 4119133
Alignment:
| Q |
127 |
cccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtctcaattgatttct |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
4118893 |
cccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggacacgttttt-gatagctgtccaaagtctcaattgatttct |
4118991 |
T |
|
| Q |
227 |
cttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagc |
326 |
Q |
| |
|
||||||||||||||||||| || |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4118992 |
cttttcttctttaaaatagccaaaacgttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcgcatgagataaccagc |
4119091 |
T |
|
| Q |
327 |
tgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
| ||||||||||||||||||| || ||||| |||||||||| |
|
|
| T |
4119092 |
tttaatgagctgtataacttgttgctcacttctgatgatgtc |
4119133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 24412656 - 24412307
Alignment:
| Q |
18 |
agtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24412656 |
agtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgac |
24412557 |
T |
|
| Q |
118 |
cttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtctcaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
24412556 |
cttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgt-ttttgatagctgtccaaagtctcaa |
24412458 |
T |
|
| Q |
218 |
ttgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24412457 |
ttgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgag |
24412358 |
T |
|
| Q |
318 |
ttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24412357 |
ataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
24412307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 30445185 - 30445538
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30445185 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagctttcaaaactcttgctta |
30445284 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
30445285 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacg-tttttgatagctgtccaaagtc |
30445383 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30445384 |
tcatttgatttctcttttcttcttaaaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
30445483 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30445484 |
tgagataaccagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
30445538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 30454557 - 30454910
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30454557 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagctttcaaaactcttgctta |
30454656 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
30454657 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacg-tttttgatagctgtccaaagtc |
30454755 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30454756 |
tcatttgatttctcttttcttcttaaaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
30454855 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30454856 |
tgagataaccagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
30454910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 30459615 - 30459968
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30459615 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagctttcaaaactcttgctta |
30459714 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
30459715 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacg-tttttgatagctgtccaaagtc |
30459813 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30459814 |
tcatttgatttctcttttcttcttaaaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
30459913 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30459914 |
tgagataaccagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
30459968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 18568870 - 18568517
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18568870 |
atatagtgagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagctttcaaaactcttgctta |
18568771 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
18568770 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgt-ttttgatagctgtccaaagtc |
18568672 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18568671 |
tcatttgatttctcttttcttcttaaaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
18568572 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||| |||||| |||||||||| |
|
|
| T |
18568571 |
tgagataaccagctgtaatgagctgtgtaacttgcagtccacttctgatgatgtc |
18568517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 24422105 - 24421767
Alignment:
| Q |
18 |
agtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24422105 |
agtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgac |
24422006 |
T |
|
| Q |
118 |
cttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtctcaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
24422005 |
cttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgctggacacgt-ttttgatagctgtccaaagtctcaa |
24421907 |
T |
|
| Q |
218 |
ttgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24421906 |
ttgatttctcttttcttctttaaaatag-----------ccagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgag |
24421818 |
T |
|
| Q |
318 |
ttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24421817 |
ataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
24421767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 348
Target Start/End: Complemental strand, 22489018 - 22488686
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22489018 |
atatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttgctta |
22488919 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
22488918 |
tgaccttcaaagacccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggacacgt-ttttgatagctgtccaaagtc |
22488820 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||| || |
|
|
| T |
22488819 |
tcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcactgttgc-ttgcttgcaca |
22488721 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgc |
348 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
22488720 |
tgagataaccagctgtaatgagctgtataacttgc |
22488686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 54 - 368
Target Start/End: Complemental strand, 4635754 - 4635442
Alignment:
| Q |
54 |
gctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtc |
153 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4635754 |
gctttgtttgcagtgatgattttcacttagagagatattagcttgcaaaactctagcttatgaccttcaaagacccttgtatttataggtgaggagtgtc |
4635655 |
T |
|
| Q |
154 |
ttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacg |
253 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | |
|
|
| T |
4635654 |
ttggtgatcaagggagaaaatagagctgttggatgcg-tttttgatagttgtccaaagtctcaattgatttttcttttcttctttaaaatagctagaatg |
4635556 |
T |
|
| Q |
254 |
ttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagccc |
353 |
Q |
| |
|
|| ||| |||||||||||||||||||||| ||||||||||||| |||| |||||||||| |||| |||||| ||||||||| ||||||||||| || | |
|
|
| T |
4635555 |
ttctcaaaatgttctttctgatttgcctggctttgaaagcactattgc-ttgcttgcgcgtgagagaaccagttgtaatgagttgtataacttgttgcgc |
4635457 |
T |
|
| Q |
354 |
acttatgatgatgtc |
368 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
4635456 |
actgctgatgatgtc |
4635442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 168 - 339
Target Start/End: Original strand, 24278817 - 24278987
Alignment:
| Q |
168 |
agaaaatagagctgttggacacgttttttgatagttgtccaaagtctcaattgatttctcttttcttcttt-aaaatagtcagaacgttttcagaatgtt |
266 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||| ||||||| ||||||||| ||| |||||| |
|
|
| T |
24278817 |
agaaaatagagttgttggacacgttttttgatagctgtccaaaatctcagttgatttctctcttcttctttaaaaatagccagaacgttctca-aatgtt |
24278915 |
T |
|
| Q |
267 |
ctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgt |
339 |
Q |
| |
|
| |||||||||||| |||||| ||| |||||| ||||||| ||||||| ||||| |||||||| |||| |
|
|
| T |
24278916 |
gtgtctgatttgcctaactttgcttgcattgttgc-ttgcttgtgcatgagagtaccagttgtaatgaactgt |
24278987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 168 - 339
Target Start/End: Complemental strand, 24383397 - 24383227
Alignment:
| Q |
168 |
agaaaatagagctgttggacacgttttttgatagttgtccaaagtctcaattgatttctcttttcttcttt-aaaatagtcagaacgttttcagaatgtt |
266 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||| ||||||| ||||||||| ||| |||||| |
|
|
| T |
24383397 |
agaaaatagagttgttggacacgttttttgatagctgtccaaaatctcagttgatttctctcttcttctttaaaaatagccagaacgttctca-aatgtt |
24383299 |
T |
|
| Q |
267 |
ctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgt |
339 |
Q |
| |
|
| |||||||||||| |||||| ||| |||||| ||||||| ||||||| ||||| |||||||| |||| |
|
|
| T |
24383298 |
gtgtctgatttgcctaactttgcttgcattgttgc-ttgcttgtgcatgagagtaccagttgtaatgaactgt |
24383227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 22118460 - 22118545
Alignment:
| Q |
23 |
gagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagag-atattagcttgcaaaactctt |
108 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||| ||||||| ||||| |||| |||||||||| |
|
|
| T |
22118460 |
gagagcttggaatttgatttgtttgtgaagagctttgtatgtagtgatgattttcac-ttgagagaatatttgctttcaaaactctt |
22118545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 3242643 - 3242996
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3242643 |
atatagtgagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
3242742 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
3242743 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacg-tttttgatagctgtccaaagtc |
3242841 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3242842 |
tcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgca |
3242941 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3242942 |
tgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
3242996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 3917898 - 3917545
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3917898 |
atatagtgagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
3917799 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
3917798 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgt-ttttgatagctgtccaaagtc |
3917700 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3917699 |
tcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgca |
3917600 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3917599 |
tgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
3917545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 26812340 - 26811987
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26812340 |
atatagtgagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
26812241 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
26812240 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgt-ttttgatagctgtccaaagtc |
26812142 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26812141 |
tcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgca |
26812042 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26812041 |
tgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
26811987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 26821807 - 26821454
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26821807 |
atatagtgagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
26821708 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
26821707 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgt-ttttgatagctgtccaaagtc |
26821609 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26821608 |
tcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgca |
26821509 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26821508 |
tgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
26821454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 54690269 - 54690622
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
54690269 |
atatagtgagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagctttcaaaactcttgctta |
54690368 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
54690369 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacg-tttttgatagctgtccaaagtc |
54690467 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54690468 |
tcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgca |
54690567 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
54690568 |
tgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
54690622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 54699700 - 54700053
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
54699700 |
atatagtgagagagcttggaatttgctttgtatgcgaagagctttgtttgtagtgatgattttcactttgagagatattagctttcaaaactcttgctta |
54699799 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
54699800 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacg-tttttgatagctgtccaaagtc |
54699898 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54699899 |
tcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgca |
54699998 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
54699999 |
tgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
54700053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 37058919 - 37058566
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37058919 |
atatagtgagagagcttggaatttgctttgtttgcgaagagctctgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttgctta |
37058820 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| ||||||||| ||||||||||| |
|
|
| T |
37058819 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagttgttggacacgt-ttttgatagctgtccaaagtc |
37058721 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
37058720 |
tcaattgatttctcttttcttctttaaaatagccagaacgttctcaaaatgttctttctgatttgcctggctttgaaagcactgttgttttgcttgcgca |
37058621 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
37058620 |
tgagataaccagctgtaatgagctgtataactttgtgcccacttctgatgatgtc |
37058566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 15843253 - 15843605
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15843253 |
atatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttgctta |
15843352 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||| ||||||| |
|
|
| T |
15843353 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggacacgtttttt-atagctgttcaaagtc |
15843451 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||| ||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
15843452 |
tcaattgatttctcttttcttctttaaaatagccataacgttctcataatgttctttctgatttgcctggctttgaaagcactgttgc-ttgcttgcgca |
15843550 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||| ||||| | |||||||||| |
|
|
| T |
15843551 |
tgagataaccagctgtaatgagctgtataatttgctgcccaatgctgatgatgtc |
15843605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 18125763 - 18125822
Alignment:
| Q |
15 |
tatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgatttt |
76 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||| |||||||||| |||| ||||||||||||||| |
|
|
| T |
18125763 |
tataatgagagagcttggtatttg-tttgtttgtgaagagc-ttgtatgtagtgatgatttt |
18125822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 28352077 - 28352430
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28352077 |
atatagtgagagagcttggaatttgctttgtttgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
28352176 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
28352177 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacg-tttttgatagctgtccaaagtc |
28352275 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28352276 |
tcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgca |
28352375 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
28352376 |
tgagataaccagctgtgatgagttgtataacttgcagcccacttctgatgatgtc |
28352430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 28368010 - 28368362
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28368010 |
atatagtgagagagcttggaatttgctttgtttgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
28368109 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
28368110 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggt-accaagggagaaaatagagctgttggacacgttttt-gatagctgtccaaagtc |
28368207 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28368208 |
tcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgca |
28368307 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28368308 |
tgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
28368362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 28375828 - 28376180
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28375828 |
atatagtgagagagcttggaatttgctttgtttgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
28375927 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
28375928 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggt-accaagggagaaaatagagctgttggacacgttttt-gatagctgtccaaagtc |
28376025 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28376026 |
tcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgca |
28376125 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28376126 |
tgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
28376180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 28383650 - 28384002
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28383650 |
atatagtgagagagcttggaatttgctttgtttgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
28383749 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
28383750 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggt-accaagggagaaaatagagctgttggacacgttttt-gatagctgtccaaagtc |
28383847 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28383848 |
tcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgca |
28383947 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28383948 |
tgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
28384002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 49 - 368
Target Start/End: Original strand, 38529528 - 38529846
Alignment:
| Q |
49 |
gaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgagga |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||| |
|
|
| T |
38529528 |
gaagagctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttgcttataatcttcaaaggcccttgtatttataggcgagga |
38529627 |
T |
|
| Q |
149 |
gtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtctcaattgatttc-tcttttcttctttaaaatagtc |
247 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| | |
|
|
| T |
38529628 |
gtgtcttggtgatcaagggagaaaatagagttgttggacacgtttttt-atagttgtccaaagtctcaattgatttctttttttcttctttaaaatagcc |
38529726 |
T |
|
| Q |
248 |
agaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttg |
347 |
Q |
| |
|
||| |||| |||||||||||||||||| ||| |||||||||||||||||||||| |||||||||| |||| |||||||||||||||| ||| ||||||| |
|
|
| T |
38529727 |
agaccgttctcagaatgttctttctgaattgtctgactttgaaagcactgttgc-ttgcttgcgcgtgagagaaccagctgtaatgagttgtttaacttg |
38529825 |
T |
|
| Q |
348 |
cagcccacttatgatgatgtc |
368 |
Q |
| |
|
||||| | |||||||||| |
|
|
| T |
38529826 |
ttgcccaatgttgatgatgtc |
38529846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 4951426 - 4951164
Alignment:
| Q |
16 |
atagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagaga-tattagcttgcaaaact-cttgctta |
113 |
Q |
| |
|
||||||||||| ||||||||||||||||| || ||||| ||||||||||||| |||||||||||| |||||| |||| ||||||||||| || ||| |
|
|
| T |
4951426 |
atagtgagagaacttggaatttgctttgtttgcaaagagttttgtttgtagtggtgattttcactt-gagagaatatttacttgcaaaacttctatctt- |
4951329 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
| ||||||||| | |||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||| |||||||| |||| |||||| |
|
|
| T |
4951328 |
taaccttcaaaaccacttgtatttataggtgaggagtgtcttggtgatcaagggagaaactagagttgttggacacgt-ttttgataactgtctaaagtc |
4951230 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgc |
279 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||| ||| |||||| | |||||||||| |
|
|
| T |
4951229 |
tcaattgatttctcttttcttcttaaaaataggaagaacgttctcataatgttatgtctgatttgc |
4951164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 27169204 - 27168983
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagaga-tattagcttgcaaaactcttgctt |
112 |
Q |
| |
|
||||| |||||||||||| ||||| ||||| |||||||| |||||| |||||||||||||||||||| |||||| | | ||| |||||||||| | |
|
|
| T |
27169204 |
atataatgagagagcttgaaatttt-tttgtttgtgaagaactttgtatgtagtgatgattttcactt-gagagaatgcttactttcaaaactcttatat |
27169107 |
T |
|
| Q |
113 |
atgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagt |
212 |
Q |
| |
|
| |||||| | | ||||| ||||||||||||||||| |||||||| |||| |||||||||| |||||||||||||| || || ||||||| | |
|
|
| T |
27169106 |
agaaccttctagaccacttgtgtttataggtgaggagtgacttggtgatcaagagtgaaaatagaggtgttggacacgtttagtg-cagctgtccaacga |
27169008 |
T |
|
| Q |
213 |
ctcaattgatttctcttttcttctt |
237 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
27169007 |
ttcaattgatttcacttttcttctt |
27168983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 63 - 241
Target Start/End: Original strand, 7784561 - 7784738
Alignment:
| Q |
63 |
gtagtgatgattttcactttgagaga-tattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgac |
161 |
Q |
| |
|
||||||||||||||||||| |||||| || | |||| ||||||||| ||| ||||||| | | |||||||||||||||||| |||| |||||||| |
|
|
| T |
7784561 |
gtagtgatgattttcactt-gagagaatacttgcttttaaaactcttactttcaaccttcataaccacttgtatttataggtgagcagtgccttggtgat |
7784659 |
T |
|
| Q |
162 |
caaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtctcaattgatttctcttttcttctttaaa |
241 |
Q |
| |
|
|||| |||||||| | ||||||||| | |||||| || | ||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
7784660 |
caagagtgaaaatagtgttgttggacatg-tttttggcagctttccaaagcttcaattgatttcacttttcttctttaaa |
7784738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 44
Target Start/End: Original strand, 24794902 - 24794932
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgt |
44 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
24794902 |
atatagtgagagagcttggaatttgctttgt |
24794932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 4361867 - 4361926
Alignment:
| Q |
15 |
tatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgatttt |
76 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||| |||||||||| |||| ||||||||||||||| |
|
|
| T |
4361867 |
tataatgagagagcttggtatttg-tttgtttgtgaagagc-ttgtatgtagtgatgatttt |
4361926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0482 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: scaffold0482
Description:
Target: scaffold0482; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 3365 - 3012
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
3365 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgacagatattagcttacaaaactcttgctta |
3266 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
3265 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgt-ttttgatagctgtccaaagta |
3167 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3166 |
tcttttgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
3067 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3066 |
tgagataaccagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
3012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 7789434 - 7789787
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
7789434 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgacagatattagcttacaaaactcttgctta |
7789533 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
7789534 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacg-tttttgatagctgtccaaagta |
7789632 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7789633 |
tcttttgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
7789732 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7789733 |
tgagataaccagctgtaatgagctgtataacttgcagcccacttctgatgatgtc |
7789787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 20713902 - 20713818
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttg |
98 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20713902 |
atatagtgagagagcttggaattttctttgtttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagcttg |
20713818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 15827474 - 15827408
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactt |
81 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||| |||||| | |||||| |||||||||||||||||||| |
|
|
| T |
15827474 |
atataatgagatagcttggaatttg-tttgtttgtgaaaaactttgtatgtagtgatgattttcactt |
15827408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 15833786 - 15833720
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactt |
81 |
Q |
| |
|
||||| |||||| ||||| |||||| ||||| ||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
15833786 |
atataatgagagggcttgcaatttg-tttgtttgtgaggagctttgtatgtagtgatgattttcactt |
15833720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 18420384 - 18420031
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18420384 |
atatagtgagagagctttgaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
18420285 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
18420284 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgt-ttttgatagctgtccaaagtc |
18420186 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18420185 |
tcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgca |
18420086 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18420085 |
tgagataaccagctgtgatgagctgtataacttgcagcccacttctgatgatgtc |
18420031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 23895972 - 23896325
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23895972 |
atatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcactttgagagatattagcttacaaaactcttgctta |
23896071 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23896072 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggacacg-tttttgatagttgtccaaagtc |
23896170 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23896171 |
tcaattgatttctcttttcttctttaaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcgca |
23896270 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
23896271 |
tgagataaccagctgtaatgagctgtataacttgctgcccacttctgatgatgtc |
23896325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 14102022 - 14101770
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagaga-tattagcttgcaaaactcttgctt |
112 |
Q |
| |
|
|||||||||||||| ||||| |||| ||| ||||||||| ||||| |||||||||||||||||||| |||| | |||| |||| ||||||||||| | |
|
|
| T |
14102022 |
atatagtgagagag-ttggagtttgttttaattgtgaagagttttgtatgtagtgatgattttcactt-gagataatatttgctttaaaaactcttgcat |
14101925 |
T |
|
| Q |
113 |
atgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagt |
212 |
Q |
| |
|
| || |||||| | |||||||||||||||||||||| |||||||| |||| |||||||||| ||||||| ||| |||||| || ||||||||| |
|
|
| T |
14101924 |
ttaacattcaaaaccaattgtatttataggtgaggagtgccttggtgatcaagagtgaaaatagagttgttggatacg-tttttggcagctgtccaaagc |
14101826 |
T |
|
| Q |
213 |
ctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttct |
268 |
Q |
| |
|
|||||||||||| ||||||||| |||||| | |||||||| |||||||||||| |
|
|
| T |
14101825 |
ttcaattgatttcacttttcttcattaaaacgggaagaacgttctcagaatgttct |
14101770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 12173144 - 12173040
Alignment:
| Q |
131 |
tgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtctcaattgatttctcttt |
230 |
Q |
| |
|
||||||||||| || ||||||| ||||||| || |||||||||| |||||| ||| ||||| |||| | |||||||| |||||||||||| |||| |
|
|
| T |
12173144 |
tgtatttatagatgtggagtgtgttggtgataaactatgaaaatagagttgttgggcacattttt--atagatatccaaagtttcaattgatttcacttt |
12173047 |
T |
|
| Q |
231 |
tcttctt |
237 |
Q |
| |
|
||||||| |
|
|
| T |
12173046 |
tcttctt |
12173040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 54 - 368
Target Start/End: Original strand, 31203 - 31516
Alignment:
| Q |
54 |
gctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtc |
153 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31203 |
gctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtc |
31302 |
T |
|
| Q |
154 |
ttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacg |
253 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31303 |
ttggtgaacaagggagaaaatagagctgttggacacgttttt-gatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacg |
31401 |
T |
|
| Q |
254 |
ttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagccc |
353 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
31402 |
ttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcacatgagataaccagctgtaatgagctgtataacttgctgccc |
31501 |
T |
|
| Q |
354 |
acttatgatgatgtc |
368 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
31502 |
acttctgatgatgtc |
31516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 9878 - 9612
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagaga-tattagcttgcaaaactcttgctt |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||| || ||||||||||||||||||||||| ||||||||| |||||| |||| ||| |||||||||||| | |
|
|
| T |
9878 |
atatagtgagagagcttgaaatttgctttgtttgcgaagagctttgtttgtagtgatgtttttcactt-gagagaatattttctttcaaaactcttgcct |
9780 |
T |
|
| Q |
113 |
atgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagt |
212 |
Q |
| |
|
| ||||||||| |||||| |||||||||||||||||||||||| ||||| |||||||||| || ||||||| ||||| ||||| |||||||||| |
|
|
| T |
9779 |
ttaaccttcaaaactatttgtatatataggtgaggagtgtcttggtgatcaagggtgaaaatagagttgatggacacattttt-gatagctgtccaaagt |
9681 |
T |
|
| Q |
213 |
ctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcct |
281 |
Q |
| |
|
|||| ||| |||| ||||||||||| ||||||| |||||||| |||||||||||| |||||||||||| |
|
|
| T |
9680 |
ctcatttgttttcacttttcttcttaaaaatagctagaacgttctcagaatgttctgtctgatttgcct |
9612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 58 - 368
Target Start/End: Complemental strand, 413086 - 412777
Alignment:
| Q |
58 |
tgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttgg |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
413086 |
tgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtcttgg |
412987 |
T |
|
| Q |
158 |
tgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacgtttt |
257 |
Q |
| |
|
||| ||||| ||||||||||| |||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
412986 |
tgatcaagggagaaaatagagttgttggactc-ttttttgatagctgtccaaagtctcaattgatttctcttttcttctttaaaatagccagaacgttct |
412888 |
T |
|
| Q |
258 |
cagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagcccactt |
357 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
412887 |
cataatgttctttctgatttgtctgactttgaaagcactattgctttgcttgcacatgagataaccagctgtaatgagctgtataacttgctgcccactt |
412788 |
T |
|
| Q |
358 |
atgatgatgtc |
368 |
Q |
| |
|
|||||||||| |
|
|
| T |
412787 |
ctgatgatgtc |
412777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 54 - 368
Target Start/End: Original strand, 26500 - 26812
Alignment:
| Q |
54 |
gctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgcttatgaccttcaaaggcccttgtatttataggtgaggagtgtc |
153 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26500 |
gctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttacttatgaccttcaaaggcccttgtatttataggtgaggagtgtc |
26599 |
T |
|
| Q |
154 |
ttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtctcaattgatttctcttttcttctttaaaatagtcagaacg |
253 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26600 |
ttggtgatcaagggagaaaatagagatgttggacac-atttttgatagctatccaaagtctcaattgatttctcttttcttctttaaaatagccagaacg |
26698 |
T |
|
| Q |
254 |
ttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagttaaccagctgtaatgagctgtataacttgcagccc |
353 |
Q |
| |
|
|| |||||||||||||||||||||| ||| |||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
26699 |
ttctcagaatgttctttctgatttgtctggctttgaaagcactgttgc-ttgtatgcgcatgagttaatcagctgtaatgagctgtataacttgctgccc |
26797 |
T |
|
| Q |
354 |
acttatgatgatgtc |
368 |
Q |
| |
|
| | |||||||||| |
|
|
| T |
26798 |
aatgctgatgatgtc |
26812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 347
Target Start/End: Original strand, 24023097 - 24023428
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| |
|
|
| T |
24023097 |
atatagtgagagagcttggaatttgctttatttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaagtcttggtta |
24023196 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||||||||||| |||||||||| | ||||||||| |
|
|
| T |
24023197 |
taaccttcaaaagcccttgtatttataggtgaggagtgtcttagtgatcaagggagaaaatagagttgttggacacg-tttttgatagctatccaaagtc |
24023295 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| | |||||||||| ||||| |||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
24023296 |
tcaattgatttctcttttcttctttaaaatagccagaacgttcttagaatgttctgtctgaattgccttactttgaaagcactgttgcttt-cttgcgcg |
24023394 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttg |
347 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||| |
|
|
| T |
24023395 |
tgagagaaccaactgtaatgagctgtttaacttg |
24023428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 31710821 - 31711162
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagagatattagcttgcaaaactcttgctta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
31710821 |
atatagtgagagagcttggaatttgctttgtttgcgaagagctttgtttgtagtgatgattttcacttagagagatattagcttgcaaaactcttactta |
31710920 |
T |
|
| Q |
114 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| || |||||||||||||||||||||| |
|
|
| T |
31710921 |
tgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgatcaagtgagaaaatagagttgttggacgcg-tttttgatagttgtccaaagtc |
31711019 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgca |
313 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||| |||||||||| |
|
|
| T |
31711020 |
tcaattgatttctcttttcttcttaaaaatag-----------ccagaatgttctttctgattttcctggctttgaaagcactgttgc-ttgcttgcgcg |
31711107 |
T |
|
| Q |
314 |
tgagttaaccagctgtaatgagctgtataacttgcagcccacttatgatgatgtc |
368 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||| ||||| | |||||||||| |
|
|
| T |
31711108 |
tgagagaaccagttgtaatgagctgtataacttgttgcccaatgctgatgatgtc |
31711162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 14 - 303
Target Start/End: Complemental strand, 14272887 - 14272600
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagaga-tattagcttgcaaaactcttgctt |
112 |
Q |
| |
|
|||||||||||||| ||||| |||| ||||| ||||||||| ||||| ||||||||||||||||| || ||||| | || |||| |||||||||| | | |
|
|
| T |
14272887 |
atatagtgagagag-ttggagtttgttttgtttgtgaagagttttgtatgtagtgatgattttca-ttcaagagaatgtttgctttcaaaactcttacct |
14272790 |
T |
|
| Q |
113 |
atgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagt |
212 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| ||||| |||||||||| |
|
|
| T |
14272789 |
ttaaccttcaaagacccttgtatttataggtgaggagtgtcttggtgatcaagggagaaaatagagttgttggacacgttttt-gatagctgtccaaagt |
14272691 |
T |
|
| Q |
213 |
ctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctt |
303 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| |||||||||||||||||||||| ||||| |||||| |||||||||||| |||||||| |
|
|
| T |
14272690 |
ctcaattgatttctcttttctacttataaatagccagaacgttttcagaatgttctgtctgaattgcctaactttgaaagcattgttgctt |
14272600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 339
Target Start/End: Original strand, 15810336 - 15810659
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactttgagag-atattagcttgcaaaactcttgctt |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||| || || |||||||||||||||||||| ||||||| ||||||| ||||| ||| |||||||||||| | |
|
|
| T |
15810336 |
atatagtgagagagcttgaaatttgctttgtttgcgaggagctttgtttgtagtgatgtttttcac-ttgagagaatattttctttcaaaactcttgcct |
15810434 |
T |
|
| Q |
113 |
atgaccttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacgttttttgatagttgtccaaagt |
212 |
Q |
| |
|
| | |||||| | ||||||||||||||||| |||||||||||||| ||| | | |||||||| |||||||||| |||||||||| |||||||||| |
|
|
| T |
15810435 |
ttaaaattcaaaaccacttgtatttataggtgatgagtgtcttggtgatcaatggtgcaaatagagttgttggacac-atttttgatagctgtccaaagt |
15810533 |
T |
|
| Q |
213 |
ctcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgc |
312 |
Q |
| |
|
| |||||||||| |||||||||| ||||||| ||||| | | |||||||||| | |||||||||| | |||||| |||||||||| ||||||||| |
|
|
| T |
15810534 |
cctaattgatttcatttttcttcttaaaaatagacagaatgatctcagaatgttatgtctgatttgcataactttgcttgcactgttgc-ttgcttgcga |
15810632 |
T |
|
| Q |
313 |
atgagttaaccagctgtaatgagctgt |
339 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
15810633 |
gtgagagaaccagctgtaatgagctgt |
15810659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 116 - 282
Target Start/End: Original strand, 41000835 - 41001003
Alignment:
| Q |
116 |
accttcaaaggcccttgtatttataggtgaggagtgtcttggtgaccaaggcagaaaatagagctgttggacacg--ttttttgatagttgtccaaagtc |
213 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||| |||||||| |||| |||||||||| ||||||||||| |||||| |||| ||||||||||| |
|
|
| T |
41000835 |
accttcaaaaccacttgtatttataggtgaggagtgccttggtgatcaagagtgaaaatagagatgttggacacgtttttttttatagatgtccaaagtc |
41000934 |
T |
|
| Q |
214 |
tcaattgatttctcttttcttctttaaaatagtcagaacgttttcagaatgttctttctgatttgcctg |
282 |
Q |
| |
|
||| |||||||| ||||||||||| ||| | | ||||| | | |||||||||| | ||||||||||||| |
|
|
| T |
41000935 |
tcatttgatttcacttttcttcttaaaattgggcagaaagatctcagaatgttatgtctgatttgcctg |
41001003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 40999388 - 40999455
Alignment:
| Q |
14 |
atatagtgagagagcttggaatttgctttgtatgtgaagagctttgtttgtagtgatgattttcactt |
81 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || |||||||||||| |||||||||| ||||||||| |
|
|
| T |
40999388 |
atatagtgagagagcttggaatttactttgtttgcgaagagctttgtatgtagtgatgtttttcactt |
40999455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University