View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18255_low_27 (Length: 340)
Name: NF18255_low_27
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_low_27 |
 | |
|
| [»] scaffold0072 (1 HSPs) |
| | |
|
| [»] scaffold0498 (1 HSPs) |
| | |
|
| [»] scaffold0098 (1 HSPs) |
| | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
| [»] scaffold0149 (1 HSPs) |
| | |
|
| [»] scaffold0078 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 26 - 330
Target Start/End: Original strand, 26279988 - 26280292
Alignment:
| Q |
26 |
aggcatgtcactactcaaactaaattaaaatatcatctgtggaacaatacatcatcggcaaaagtattaagaacagatttaaacctaagattatattgaa |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26279988 |
aggcatgtcactactcaaactaaattaaaatatcatctgtggaacaatacatcatcggcaaaagcattaagaacagatttaaacctaagattatattgaa |
26280087 |
T |
|
| Q |
126 |
tgcataaatcatatgcaattagtcagattaagagtaatacatagaatcctagatatttacatctaatcccaatataaaagtaagttcagttacccatgga |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26280088 |
tgcataaatcatatgcaattagtcagattaagagtaatacatagaatcctagatatttacatctaatcccaatataaaagtaagttcagttacccatgga |
26280187 |
T |
|
| Q |
226 |
gagcataactaacaagagaaggttgatgaatgttgacaaagcatcaaaaaatttggaatcaagctccctagccctcctatggccactcaggccttcctct |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26280188 |
gagcataactaacaagagaaggttgatgaatgttgacaaagcatcaaaaaatttggaatcaagctccctagccctcctatggccactcaggccttcctct |
26280287 |
T |
|
| Q |
326 |
ctctg |
330 |
Q |
| |
|
||||| |
|
|
| T |
26280288 |
ctctg |
26280292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 304
Target Start/End: Original strand, 11222919 - 11223137
Alignment:
| Q |
86 |
aaagtattaagaacagatttaaacctaagattatattgaatgcataaatcatatgcaattagtcagattaagagtaatacatagaatcctagatatttac |
185 |
Q |
| |
|
|||| ||||||||| ||||||||| ||| ||| ||||||| ||||||| |||| | | | || ||||| |||| |||||||||| ||| ||||||| |
|
|
| T |
11222919 |
aaagcattaagaacggatttaaacaaaagtttaaattgaattcataaataatatacgaccaaacaaattaaaagtactacatagaatactaactatttac |
11223018 |
T |
|
| Q |
186 |
atctaatcccaatataaaagtaagttcagttacccatggagagcataactaacaagagaaggttgatgaatgttgacaaagcatcaaaaaatttggaatc |
285 |
Q |
| |
|
||||||| || | | |||| |||| ||||||||||||| ||||||| |||||||| || ||||||| | |||| ||||||||| || ||| | | |
|
|
| T |
11223019 |
atctaattccgacacaaaatagagtttagttacccatggaaagcataaataacaagataatgttgatggaagttggagaagcatcaacaagcttgaatac |
11223118 |
T |
|
| Q |
286 |
aagctccctagccctccta |
304 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
11223119 |
aagctccctaaccctccta |
11223137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 11917832 - 11917876
Alignment:
| Q |
100 |
agatttaaacctaagattatattgaatgcataaatcatatgcaat |
144 |
Q |
| |
|
||||||||||| ||| ||||||||||| |||||||||||| |||| |
|
|
| T |
11917832 |
agatttaaaccaaaggttatattgaatacataaatcatatacaat |
11917876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 84 - 236
Target Start/End: Original strand, 13002549 - 13002701
Alignment:
| Q |
84 |
caaaagtattaagaacagatttaaacctaagattatattgaatgcataaatcatatgcaattagtcagattaagagtaatacatagaatcctagatattt |
183 |
Q |
| |
|
||||||||||||||| | ||||||||| |||||||||||||||||||||||||||| ||| ||| || |||||||||||||||||||||| ||||||||| |
|
|
| T |
13002549 |
caaaagtattaagaatatatttaaaccaaagattatattgaatgcataaatcatatacaactagccaaattaagagtaatacatagaatcttagatattt |
13002648 |
T |
|
| Q |
184 |
acatctaatcccaatataaaagtaagttcagttacccatggagagcataacta |
236 |
Q |
| |
|
|||||||||||||| | |||| || || |||||| |||||||||||||||| |
|
|
| T |
13002649 |
acatctaatcccaacacgaaagaaattttagttacatatggagagcataacta |
13002701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 84 - 236
Target Start/End: Original strand, 13077207 - 13077359
Alignment:
| Q |
84 |
caaaagtattaagaacagatttaaacctaagattatattgaatgcataaatcatatgcaattagtcagattaagagtaatacatagaatcctagatattt |
183 |
Q |
| |
|
||||||||||||||| | ||||||||| |||||||||||||||||||||||||||| ||| ||| || |||||||||||||||||||||| ||||||||| |
|
|
| T |
13077207 |
caaaagtattaagaatatatttaaaccaaagattatattgaatgcataaatcatatacaactagccaaattaagagtaatacatagaatcttagatattt |
13077306 |
T |
|
| Q |
184 |
acatctaatcccaatataaaagtaagttcagttacccatggagagcataacta |
236 |
Q |
| |
|
|||||||||||||| | |||| || || |||||| |||||||||||||||| |
|
|
| T |
13077307 |
acatctaatcccaacacgaaagaaattttagttacatatggagagcataacta |
13077359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 91 - 240
Target Start/End: Original strand, 16551101 - 16551249
Alignment:
| Q |
91 |
attaagaacagatttaaacctaagattatattgaatgcataaatcatatgcaattagtcagattaagagtaatacatagaatcctagatatttacatcta |
190 |
Q |
| |
|
|||||||| |||||||||| || ||||||||||||||| ||||||||| ||| || ||||||| ||| ||||||||| |||| ||| |||||||| |
|
|
| T |
16551101 |
attaagaatagatttaaactaaatattatattgaatgcaaaaatcatatacaacaagccagattacaagttctacatagaaccctaactatctacatcta |
16551200 |
T |
|
| Q |
191 |
atcccaatataaaagtaagttcagttacccatggagagcataactaacaa |
240 |
Q |
| |
|
|||| || | |||| |||||| ||| |||| ||||||||||||||||| |
|
|
| T |
16551201 |
atcctaacaaaaaatagagttcattta-ccatagagagcataactaacaa |
16551249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 91 - 188
Target Start/End: Original strand, 18476266 - 18476363
Alignment:
| Q |
91 |
attaagaacagatttaaacctaagattatattgaatgcataaatcatatgcaattagtcagattaagagtaatacatagaatcctagatatttacatc |
188 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||| |||||||||| ||| | | |||||||| |||||||||| |||||| |||||||||| |
|
|
| T |
18476266 |
attaagaacatatttaaactaaagattatattgaatgcgtaaatcatatacaaccatcaatattaagagcaatacatagattcctagctatttacatc |
18476363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 177
Target Start/End: Original strand, 18220866 - 18220957
Alignment:
| Q |
86 |
aaagtattaagaacagatttaaacctaagattatattgaatgcataaatcatatgcaattagtcagattaagagtaatacatagaatcctag |
177 |
Q |
| |
|
|||| |||||||| | |||||||| || ||||||||||||||||||||||||| ||| | || |||||||||| ||||||||| |||| |
|
|
| T |
18220866 |
aaagcattaagaataaatttaaactaaaaattatattgaatgcataaatcatatacaaccaaccaaattaagagtaccacatagaattctag |
18220957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 2136511 - 2136548
Alignment:
| Q |
215 |
ttacccatggagagcataactaacaagagaaggttgat |
252 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
2136511 |
ttactcatggagagcataactaacaaaagaaggttgat |
2136548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 80 - 197
Target Start/End: Original strand, 17433443 - 17433559
Alignment:
| Q |
80 |
tcggcaaaagtattaagaacagatttaaacctaagattatattgaatgcataaatcatatgcaattagtcagattaagagtaatacatagaatcctagat |
179 |
Q |
| |
|
|||||||||| | |||||||| ||||||||| |||||||||||||||||||||||||||| |||| || |||| ||||||| ||||||||||||||| | |
|
|
| T |
17433443 |
tcggcaaaagcagtaagaacacatttaaaccaaagattatattgaatgcataaatcatatacaatcagccagactaagagtgctacatagaatcctagct |
17433542 |
T |
|
| Q |
180 |
atttacatctaatcccaa |
197 |
Q |
| |
|
| ||| |||||||||||| |
|
|
| T |
17433543 |
a-ttaaatctaatcccaa |
17433559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 39 - 240
Target Start/End: Original strand, 8717964 - 8718164
Alignment:
| Q |
39 |
ctcaaactaaattaaaatatcatctgtggaacaatacatcatcggcaaaagtattaagaacagatttaaacctaagattatattgaatgcataaatcata |
138 |
Q |
| |
|
||||||||||||||||| || | | || |||| |||||| ||| |||| | |||||||||| |||||||| ||||||||||| |||||||||||| | |
|
|
| T |
8717964 |
ctcaaactaaattaaaagataaattatgtaacactacatcgtcgtcaaa-gaattaagaacatatttaaactaaagattatattaaatgcataaatcgaa |
8718062 |
T |
|
| Q |
139 |
tgcaattagtcagattaagagtaatacatagaatcctagatatttacatctaatcccaatataaaagtaagttcagttacccatggagagcataactaac |
238 |
Q |
| |
|
| ||| || || |||||||||| | |||| ||||||| |||||||||| |||||||| | ||||| |||| ||||||||||| | | |||||||||| |
|
|
| T |
8718063 |
tacaaccagccatattaagagtactgcataaaatcctaactatttacatccaatcccaacacaaaagagagtttagttacccatgaaaaacataactaac |
8718162 |
T |
|
| Q |
239 |
aa |
240 |
Q |
| |
|
|| |
|
|
| T |
8718163 |
aa |
8718164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 10583814 - 10583738
Alignment:
| Q |
91 |
attaagaacagatttaaacctaagattatattgaatgcataaatcatatgcaattagtcagattaagagtaatacat |
167 |
Q |
| |
|
||||||||| |||||||| ||||||| |||||||||| ||||||||| ||| || ||||||||||||| ||||| |
|
|
| T |
10583814 |
attaagaacgaatttaaactaaagattacattgaatgcaaaaatcatatacaaccagccagattaagagtactacat |
10583738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 5335122 - 5335207
Alignment:
| Q |
82 |
ggcaaaagtattaagaacagatttaaacctaagattatattgaatgcataaatcatatgcaattagtcagattaagagtaatacat |
167 |
Q |
| |
|
|||||||| ||| |||||||||||| | |||| |||||||||||||||||||||| ||| | | || ||||||||| |||||| |
|
|
| T |
5335122 |
ggcaaaagcattcagaacagatttataataaagaaaatattgaatgcataaatcatatacaactggccatattaagagtgatacat |
5335207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 241
Target Start/End: Complemental strand, 22116629 - 22116474
Alignment:
| Q |
86 |
aaagtattaagaacagatttaaacctaagattatattgaatgcataaatcatatgcaattagtcagattaagagtaatacatagaatcctagatatttac |
185 |
Q |
| |
|
|||| |||||||| |||||||||| | |||||||||||||||||||||||||| ||| ||| |||||||| | || | || ||| ||||| ||||||| |
|
|
| T |
22116629 |
aaagcattaagaaatgatttaaaccaaggattatattgaatgcataaatcatatacaactagccagattaaaaatactgcagagaggcctagctatttac |
22116530 |
T |
|
| Q |
186 |
atctaatcccaatataaaagtaagttcagttacccatggagagcataactaacaag |
241 |
Q |
| |
|
|||||||||||| | ||| || || | || |||||||||||||||||| ||||||| |
|
|
| T |
22116529 |
atctaatcccaacacaaacgtgagattagatacccatggagagcataaataacaag |
22116474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 302
Target Start/End: Original strand, 15582955 - 15583217
Alignment:
| Q |
39 |
ctcaaactaaattaaaatatcatctgtggaacaatacatcatcggcaaaagtattaagaacagatttaaacctaagattatattgaatgcataaatcata |
138 |
Q |
| |
|
|||||||||||| |||| ||||| ||||||||| ||||||||| |||| | |||||||||||| |||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
15582955 |
ctcaaactaaatcaaaagatcat-tgtggaacatcacatcatcgacaaa-gcattaagaacagaattaaactaaagattatatttaatacataaatcata |
15583052 |
T |
|
| Q |
139 |
tgcaattagtcagattaagagtaatacatagaatcctagatat-ttacatctaatcccaatataaaagtaagttcagttacccatggagagcataactaa |
237 |
Q |
| |
|
| ||| | || |||||||| | |||| ||||| |||| ||| |||||||||||| ||| | ||||| |||| ||||||| ||| | | |||||||| |
|
|
| T |
15583053 |
tacaaccacccatattaagagcactacaaagaattctagctatcttacatctaatctcaacacaaaagagagtttagttaccaatgaaatgtataactaa |
15583152 |
T |
|
| Q |
238 |
caagagaaggttgatgaatgttgacaaagcatcaaaaaatttggaat-caagctccctagccctcc |
302 |
Q |
| |
|
||| ||||||||||| |||||| ||||||| || || ||||||| |||||| ||||||||||| |
|
|
| T |
15583153 |
caaaagaaggttgatagatgttggataagcatc-aacaagttggaatccaagcttcctagccctcc |
15583217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 80 - 192
Target Start/End: Original strand, 27728333 - 27728445
Alignment:
| Q |
80 |
tcggcaaaagtattaagaacagatttaaacctaagattatattgaatgcataaatcatatgcaattagtcagattaagagtaatacatagaatcctagat |
179 |
Q |
| |
|
|||| ||||| |||||||||| ||||||| | ||| ||||||||||||||||||||||||||||| || ||||||| |||| || |||||||| || | |
|
|
| T |
27728333 |
tcggtaaaagcattaagaacatatttaaatcaaagtttatattgaatgcataaatcatatgcaatcaggaagattaaaagtactatatagaatcttaact |
27728432 |
T |
|
| Q |
180 |
atttacatctaat |
192 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
27728433 |
atttacatataat |
27728445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 22569711 - 22569595
Alignment:
| Q |
73 |
tacatcatcggcaaaagtattaagaacagatttaaacctaagattatattgaatgcataaatcatatgcaattagtcagattaagagtaatacatagaat |
172 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| || | || ||||||| ||||||||||| ||| || |||| |||| || |||||||||| |
|
|
| T |
22569711 |
tacatcatcggcaaaca-attaagaacagatttaaactaaatactacattgaatagataaatcatatacaactaacaagatgaagaatactacatagaat |
22569613 |
T |
|
| Q |
173 |
cctagatatttacatcta |
190 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
22569612 |
cctaactatttacatcta |
22569595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 165
Target Start/End: Complemental strand, 9965698 - 9965623
Alignment:
| Q |
91 |
attaagaacagatttaaacctaa-gattatattgaatgcataaatcatatgcaattagtcagattaagagtaatac |
165 |
Q |
| |
|
||||||||| ||||||||| || |||||||||||||||||| | ||||| ||| ||| || |||||||||||||| |
|
|
| T |
9965698 |
attaagaacgtatttaaaccaaaagattatattgaatgcatagaacatatacaactagccaaattaagagtaatac |
9965623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 30952112 - 30952034
Alignment:
| Q |
229 |
cataactaacaagagaaggttgatgaatgttgacaaagcatcaaaaaatttggaatcaagctccctagccctcctatgg |
307 |
Q |
| |
|
|||||| ||||| ||||||| ||| ||| ||| |||| |||| ||| |||||||||| ||||||||||||||||||| |
|
|
| T |
30952112 |
cataaccaacaatagaaggtcgataaattttggagaagcttcaacaaacttggaatcaacctccctagccctcctatgg |
30952034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 32044683 - 32044576
Alignment:
| Q |
91 |
attaagaacagatttaaacctaagattatattgaatgcataaatcatatgcaattagtcagattaagagtaataca-tagaatcctagatatttacatct |
189 |
Q |
| |
|
|||||||||| || |||||| ||| |||||||||||||||||||||||| |||| || ||||||||||||||||| || |||||||| || |||||||| |
|
|
| T |
32044683 |
attaagaacaaatctaaaccaaaggttatattgaatgcataaatcatatacaatcagctagattaagagtaatacattaaaatcctagctacttacatct |
32044584 |
T |
|
| Q |
190 |
aatcccaa |
197 |
Q |
| |
|
|||||||| |
|
|
| T |
32044583 |
aatcccaa |
32044576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 260
Target Start/End: Original strand, 15308505 - 15308636
Alignment:
| Q |
129 |
ataaatcatatgcaattagtcagattaagagtaatacatagaatcctagatatttacatctaatcccaatataaaagtaagttcagttacccatggaga- |
227 |
Q |
| |
|
||||||||||| ||| | ||||||||||||| |||||| | || ||| ||| |||||||||| |||| ||||||| |||| |||||||||| |||| |
|
|
| T |
15308505 |
ataaatcatatacaacaaaccagattaagagtactacataaattcatagctatatacatctaattccaacataaaagagagtttagttacccat-gagat |
15308603 |
T |
|
| Q |
228 |
gcataactaacaagagaaggttgatgaatgttg |
260 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||||| |
|
|
| T |
15308604 |
gcatgactaacaacagagggttgatgaatgttg |
15308636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 14526769 - 14526591
Alignment:
| Q |
39 |
ctcaaactaaattaaaatatcatctgtggaacaatacatcatcggcaaaagtattaagaacagatttaaacctaagattatattgaatgcataaatcata |
138 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||| ||||| | |||||| | |||||||| | |||||||| || | ||||||||||| |||||||||| |
|
|
| T |
14526769 |
ctcaaactaaataaaaatatcaattgtagaacactacatagtaggcaaa-gcattaagaagaaatttaaactaaaaagtatattgaatgtataaatcata |
14526671 |
T |
|
| Q |
139 |
tgcaattagtcagattaagagtaatacatagaatcctagatatttacatctaatcccaatataaaagtaagttcagttacccat |
222 |
Q |
| |
|
| ||| || ||||||| || |||||||||||||| |||||||||| |||||||| | ||||| ||| |||||||||| |
|
|
| T |
14526670 |
ttcaa----ccatattaagaatactacatagaatcctatctatttacatccaatcccaacacaaaagagggtttagttacccat |
14526591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 238
Target Start/End: Complemental strand, 19623720 - 19623573
Alignment:
| Q |
91 |
attaagaacagatttaaacctaagattatattgaatgcataaatcatatgcaattagtcagattaagagtaatacatagaatcctagatatttacatcta |
190 |
Q |
| |
|
||||| |||| |||||||| ||||||| |||||||| ||||||||||| ||| | || |||||||| | |||||||| ||| |||||||||| | |
|
|
| T |
19623720 |
attaaaaacatatttaaactaaagattacattgaatggataaatcatatacaaccaaccatattaagagcgctgcatagaatattagttatttacatcca |
19623621 |
T |
|
| Q |
191 |
atcccaatataaaagtaagttcagttacccatggagagcataactaac |
238 |
Q |
| |
|
||||||| |||||| |||| | ||||||||||| ||||||||||| |
|
|
| T |
19623620 |
atcccaacataaaatagagtttacttacccatggaatgcataactaac |
19623573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 20618070 - 20618145
Alignment:
| Q |
112 |
aagattatattgaatgcataaatcatatgcaattagtcagattaagagtaatacatagaatcctagatatttacat |
187 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| | ||||||||||||| |||||||| ||||| ||||||||| |
|
|
| T |
20618070 |
aagattatattgaatccataaatcatatacaaccaaccagattaagagtactacatagattcctatctatttacat |
20618145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 197
Target Start/End: Original strand, 12830575 - 12830722
Alignment:
| Q |
48 |
aattaaaatatcatctgtggaacaatacatcatcggcaaaagtattaagaacagatttaaacctaagattatattgaatgcataaatcatatgcaattag |
147 |
Q |
| |
|
|||||||| |||| || |||||| |||||| ||| |||| | |||||||| ||||||||| ||| || ||||||||||| ||||||||| ||| | |
|
|
| T |
12830575 |
aattaaaagatcaattgcggaacactacatcgtcgacaaa-gcattaagaatggatttaaac-taaaatcatattgaatgcgtaaatcatacacaaccaa |
12830672 |
T |
|
| Q |
148 |
tcagattaagagtaatacatagaatcctagatatttacatctaatcccaa |
197 |
Q |
| |
|
||| |||||||| | || ||||| |||||| |||||||||| ||| |||| |
|
|
| T |
12830673 |
tcaaattaagagaagtatatagattcctagttatttacatcaaattccaa |
12830722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 135
Target Start/End: Original strand, 25373261 - 25373356
Alignment:
| Q |
39 |
ctcaaactaaattaaaatatcatctgtggaacaatacatcatcggcaaaagtattaagaacagatttaaacctaagattatattgaatgcataaatc |
135 |
Q |
| |
|
|||||||||||| |||| |||| || |||||| |||||| ||| ||||| ||||||| | ||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
25373261 |
ctcaaactaaatcaaaagatcaattgcggaacactacatcgtcgacaaaac-attaagagcggatttaaactgaagattaaatttaatgcataaatc |
25373356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 242
Target Start/End: Original strand, 31611819 - 31611969
Alignment:
| Q |
92 |
ttaagaacagatttaaacctaagattatattgaatgcataaatcatatgcaattagtcagattaagagtaatacatagaatcctagatatttacatctaa |
191 |
Q |
| |
|
||||||||| | |||||| |||||||||||||||| || |||||||| || ||| || |||||| || | |||||||||| || ||||||||||||| |
|
|
| T |
31611819 |
ttaagaacaaagttaaactaaagattatattgaatggatgaatcatatataactagccatgttaagattactgcatagaatccaagctatttacatctaa |
31611918 |
T |
|
| Q |
192 |
tcccaatataaaagtaagttcagttacccatggagagcataactaacaaga |
242 |
Q |
| |
|
|||||| | |||| |||| ||||||||||||||| ||||| |||||||| |
|
|
| T |
31611919 |
tcccaacacaaaatatagtttagttacccatggagaacataaataacaaga |
31611969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 23391297 - 23391390
Alignment:
| Q |
157 |
gagtaatacatagaatcctagatatttacatctaatcccaatataaaagtaagttcagttacccatggagagcataactaacaagagaaggttgat |
252 |
Q |
| |
|
||||| ||||||||||||||| ||||||||| |||||| || || | |||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23391297 |
gagtactacatagaatcctagctatttacatgtaatccaaacgtacact--agtttagttacccatggagagcataactaacaagagacggttgat |
23391390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 192
Target Start/End: Original strand, 27128748 - 27128853
Alignment:
| Q |
86 |
aaagtattaagaacagatttaaacctaagattatattgaatgcataaatcatatgcaattagtcagattaagagtaatacatagaatcctagatatttac |
185 |
Q |
| |
|
||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||| ||| | ||||||| |||| |||||||| | ||| ||||| | |
|
|
| T |
27128748 |
aaagtattaagaacatatttaaac-taaaattatattgaatgtataaatcatatacaaccaacaagattaatagtactacatagatttatagctattttc |
27128846 |
T |
|
| Q |
186 |
atctaat |
192 |
Q |
| |
|
||||||| |
|
|
| T |
27128847 |
atctaat |
27128853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 7395171 - 7395220
Alignment:
| Q |
86 |
aaagtattaagaacagatttaaacctaagattatattgaatgcataaatc |
135 |
Q |
| |
|
|||| |||||||||| |||||||| ||| |||||||||||||||||||| |
|
|
| T |
7395171 |
aaagcattaagaacacatttaaactaaaggttatattgaatgcataaatc |
7395220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 196
Target Start/End: Complemental strand, 36285 - 36154
Alignment:
| Q |
63 |
tgtggaacaatacatcatcggcaaaagtattaagaacagatttaaacctaagattatattgaatgcataaatcatatgcaattagtcagattaagagtaa |
162 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||||||| ||||||| ||| ||||||||| |||||||| |||||| ||| | | |||||||| |||| |
|
|
| T |
36285 |
tgtggaacactacattgtcggcaaa-gtattaagaacatgtttaaac-taaaattatattggatgcataagtcatatacaactggccagattaaaagtac |
36188 |
T |
|
| Q |
163 |
tacatagaatcctagatatttacatctaatccca |
196 |
Q |
| |
|
|||||||| | ||||||||||||||| ||||||| |
|
|
| T |
36187 |
tacatagatttctagatatttacatccaatccca |
36154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 328
Target Start/End: Complemental strand, 28609129 - 28608974
Alignment:
| Q |
170 |
aatcctagatatttacatctaatcccaatataaaagtaagttcagttacccatggagagcataactaacaagagaaggttgatgaatgttgacaaagcat |
269 |
Q |
| |
|
|||||||| |||||||||||||||| || | || || |||| ||||| ||||| ||| ||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
28609129 |
aatcctagctatttacatctaatcctaacacaagag--agtttagttatccatgtagaacataactaacaagagaaggttgaaagatgttggagaagcat |
28609032 |
T |
|
| Q |
270 |
caaaaaatttggaat-caagctccctagccctcctatggccactcaggccttcctctctc |
328 |
Q |
| |
|
||||| || |||| ||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
28609031 |
caaaagctt--gaatccaagctccctagctctcctatggtggctcaggccttcctctctc |
28608974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 28609255 - 28609182
Alignment:
| Q |
94 |
aagaacagatttaaacctaagattatattgaatgcataaatcatatgcaattagtcagattaagagtaatacat |
167 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||| ||| | ||||||||| |||| ||||| |
|
|
| T |
28609255 |
aagaacaaatttaaacaaaagattatattgaatgcataaatcatatacaaccaatcagattaatagtactacat |
28609182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 15549447 - 15549527
Alignment:
| Q |
102 |
atttaaacctaagattatattgaatgcataaatcatatgcaattagtcagattaagagtaatacatagaatcctagatatt |
182 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||| ||| ||||||||||| |||| |||||||| |||||| |||| |
|
|
| T |
15549447 |
atttaaactaaaaattatattgaatgcataaatcatacacaaaaagtcagattaaaagtactacatagattcctagctatt |
15549527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0498 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0498
Description:
Target: scaffold0498; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 2941 - 2809
Alignment:
| Q |
86 |
aaagtattaagaacagatttaaacctaagattatattgaatgcataaatcatatgcaattagtcagattaagagtaatacatagaatcctagatatttac |
185 |
Q |
| |
|
|||| |||||||||| ||||||| ||||||||||| | |||||||||||||| ||| | ||||||||| ||| |||||| |||| ||||||||||| |
|
|
| T |
2941 |
aaagcattaagaacaaatttaaataaaagattatattaattgcataaatcatatacaacaatccagattaagcgtactacatataatcatagatatttac |
2842 |
T |
|
| Q |
186 |
atctaatcccaatataaaagtaagttcagttac |
218 |
Q |
| |
|
|| || ||||| ||||||| ||||| |||||| |
|
|
| T |
2841 |
atatagtcccagcataaaagaaagtttagttac |
2809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 152 - 260
Target Start/End: Complemental strand, 3349 - 3241
Alignment:
| Q |
152 |
attaagagtaatacatagaatcctagatatttacatctaatcccaatataaaagtaagttcagttacccatggagagcataactaacaagagaag-gttg |
250 |
Q |
| |
|
|||||||||| |||||||| | ||| |||||||||| |||||||| ||||||| ||||| ||||||||||| ||||||||||||| ||||| |||| |
|
|
| T |
3349 |
attaagagtactacatagatttctacctatttacatccaatcccaacataaaagaaagtttagttacccatgatatgcataactaacaa-agaagagttg |
3251 |
T |
|
| Q |
251 |
atgaatgttg |
260 |
Q |
| |
|
|||||||||| |
|
|
| T |
3250 |
atgaatgttg |
3241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 2756 - 2843
Alignment:
| Q |
155 |
aagagtaatacatagaatcctagatatttacatctaatcccaatataaaagtaagttcagttacccatggagagcataactaacaaga |
242 |
Q |
| |
|
||||||| ||| |||||||||| |||||| |||||||| || | ||||| |||| ||||||||||| |||||||||||||||||| |
|
|
| T |
2756 |
aagagtactacgtagaatcctaagtatttaaatctaatcgaaacacaaaagagagtttagttacccatgaagagcataactaacaaga |
2843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0149 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0149
Description:
Target: scaffold0149; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 32036 - 32078
Alignment:
| Q |
92 |
ttaagaacagatttaaacctaagattatattgaatgcataaat |
134 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||| ||||||| |
|
|
| T |
32036 |
ttaagaacggatttaaaccaaagattatattgaattcataaat |
32078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 248
Target Start/End: Original strand, 18597 - 18694
Alignment:
| Q |
151 |
gattaagagtaatacatagaatcctagatatttacatctaatcccaatataaaagtaagttcagttacccatggagagcataactaacaagagaaggt |
248 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| || | |||| |||| | |||| |||| ||| || || ||||||||||||||||||| |||||| |
|
|
| T |
18597 |
gattaagagtaatacatagaattctaactattcacgtttaattccaacacaaaatagagtttagtcactcaaggagagcataactaacaagggaaggt |
18694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 7566493 - 7566562
Alignment:
| Q |
128 |
cataaatcatatgcaattagtcagattaagagtaatacatagaatcctagatatttacatctaatcccaa |
197 |
Q |
| |
|
|||||||||||| ||| ||||||||| ||| || ||||||| |||||| |||||||||| |||||||| |
|
|
| T |
7566493 |
cataaatcatatacaaccagtcagatttagactactacataggttcctagctatttacatccaatcccaa |
7566562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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