View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18255_low_3 (Length: 808)
Name: NF18255_low_3
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 715; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 57 - 791
Target Start/End: Original strand, 47075054 - 47075788
Alignment:
| Q |
57 |
gccatatgaggaacagctgaaacagttacttttatgcataaccggaatctggacaaggaggaattgctatatcagtaactccttctaacatcaacaccac |
156 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075054 |
gccacatgaggaacagctgaaacagttacttttatgcataaccggaatctggacaaggaggaattgctatatcagtaactccttctaacatcaacaccac |
47075153 |
T |
|
| Q |
157 |
acccttcatcgttggcctgagaaaagggtcatcttggatacaccaaagtgccactttaaccatattttccatgacattattatcaatgacttcccaagga |
256 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075154 |
acccttcatcgttggcctgagaaaagggtcatcttggatacaccaaagtgccactttaaccatattttccatgacattattatcaatgacttcccaagga |
47075253 |
T |
|
| Q |
257 |
acaagattattcacctctcccgcaacaaggcacttataagcccaaccagagagaataatctcctcaggttccaacacattaacatctaggtttcttctgc |
356 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075254 |
acaagattattcacctgtcccgcaacaaggcacttataagcccaaccagagagaagaatctcctcaggttccaacacattaacatctaggtttcttctgc |
47075353 |
T |
|
| Q |
357 |
aacataaaatttcaaacaacattattccatagctataaacatcttccttaagtgatattggcacgttcatgttccattctggagccatgtagccccgtgt |
456 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075354 |
aacataaaatttcaaacaacattattccatagctataaacatctgccttaagtgatattggcacgttcatgttccattctggagccatgtagccccgtgt |
47075453 |
T |
|
| Q |
457 |
ccctctaacaaccgtgaaagttctggtttggtccggcattaaaagttttgcaagaccaaaatcagatatcttggcagtccaaaactcatccatcaaaatg |
556 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
47075454 |
ccctctaacaaccgtgaaagttctggtttggtccggcattaaaagttttgcaagaccaaaatcggatatcttggcagtccaaaactcatccatcaaaatg |
47075553 |
T |
|
| Q |
557 |
ttttgaggctttatgtcacaatgaatgattggtgcctcacattcttcatggagatacgagatccctctagcaatgtccagtgccattcttactctctcat |
656 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47075554 |
ttttgaggctttatgtcacaatgaatgattggtgcctcacattcttcatggagatacgagatccctctagcaatgtccagtgccattcttactctctcat |
47075653 |
T |
|
| Q |
657 |
cccaatctggacgtctttgatcaccaaacagaagcttttcaagtgatccgttgctcatgtattcataaaccaaaagcctttttgaaccctcatgacaaaa |
756 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075654 |
cccaatctggacgtctttgatcaccaaacagaagcttttcaagtgatccgttgctcatgtattcataaaccaaaagcctttttgaaccctcatgacaaaa |
47075753 |
T |
|
| Q |
757 |
acccagcaatctaactaggttcctgtggtgggttt |
791 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
47075754 |
acccagcaatctaactaggttcctgtggtgggttt |
47075788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 101 - 791
Target Start/End: Complemental strand, 47069232 - 47068542
Alignment:
| Q |
101 |
gaatctggacaaggaggaattgctatatcagtaactccttctaacatcaacaccacacccttcatcgttggcctgagaaaagggtcatcttggatacacc |
200 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47069232 |
gaatttggacacggaggaattgctatatcagtaatcccttctaacatcaacaccacacccttcattgttggcctgagaaaagggtcatcttggatacacc |
47069133 |
T |
|
| Q |
201 |
aaagtgccactttaaccatattttccatgacattattatcaatgacttcccaaggaacaagattattcacctctcccgcaacaaggcacttataagccca |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||| || || || ||||| |||| || ||||||||||| ||| |
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| T |
47069132 |
aaagtgccaccttaaccatattttccatgacatttttatcaatggcttctgaaggaacaagcttgtttacgtctcctgcaataaagcacttataagtcca |
47069033 |
T |
|
| Q |
301 |
accagagagaataatctcctcaggttccaacacattaacatctaggtttcttctgcaacataaaatttcaaacaacattattccatagctataaacatct |
400 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| || |||||||||||||||||||||| |
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| T |
47069032 |
accagcaagaagaatctcctcaggttccaacacattaacatctaggtttcttctgcaacataagatttccaacagcactattccatagctataaacatct |
47068933 |
T |
|
| Q |
401 |
tccttaagtgatattggcacgttcatgttccattctggagccatgtagccccgtgtccctctaacaaccgtgaaagttctggtttggtccggcattaaaa |
500 |
Q |
| |
|
|| | |||||||| ||||||| ||||||| || || |||||||| || | ||||||||| || | |||||| |||||||||||||| |||||||||| |
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| T |
47068932 |
gttttcactgatattgccacgttcttgttccactccggggccatgtaccctcttgtccctctgaccatcgtgaatgttctggtttggtctggcattaaaa |
47068833 |
T |
|
| Q |
501 |
gttttgcaagaccaaaatcagatatcttggcagtccaaaactcatccatcaaaatgttttgaggctttatgtcacaatgaatgattggtgcctcacattc |
600 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| || ||||| || |
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|
| T |
47068832 |
gttttgcaagcccaaaatcagatatcttggcagtccaaaacttatccatcaaaatgttttgaggctttaagtcgcaatgaatgattggagcatcacactc |
47068733 |
T |
|
| Q |
601 |
ttcatggagatacgagatccctctagcaatgtccagtgccattcttactctctcatcccaatctggacgtctttgatcaccaaacagaagcttttcaagt |
700 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| ||||| |
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|
| T |
47068732 |
ttcatggagatacaagatccctctagcaatatccagtgctattcttactctctcattccaatctgggcgtctttgatcaccaaaaagaagctttccaagt |
47068633 |
T |
|
| Q |
701 |
gatccgttgctcatgtattcataaaccaaaagcctttttgaaccctcatgacaaaaacccagcaatctaactaggttcctgtggtgggttt |
791 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
47068632 |
gatccgttgctcatgtattcataaaccagaagcctttttgaaccctcaacacaaaaaccaagcaatctaactaggttcctgtggtgggttt |
47068542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 146 - 357
Target Start/End: Original strand, 47086723 - 47086931
Alignment:
| Q |
146 |
atcaacaccacacccttcatcgttggcctgagaaaagggtcatcttggatacaccaaagtgccactttaaccatattttccatgacattattatcaatga |
245 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||| || ||||| ||| ||||| | ||| |||||||||||||||||||||||||||||||| | |
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|
| T |
47086723 |
atcaacaacacacccttcattgttggcctgagaaaaggttc---ttggacacatcaaagggtcaccttaaccatattttccatgacattattatcaataa |
47086819 |
T |
|
| Q |
246 |
cttcccaaggaacaagattattcacctctcccgcaacaaggcacttataagcccaaccagagagaataatctcctcaggttccaacacattaacatctag |
345 |
Q |
| |
|
|||||||||| ||||| ||||| | || || ||||||| | | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
47086820 |
cttcccaagggacaagcttatttagcttgcctgcaacaatgtaaatataagcccaaccagagagaagaatctcctcaggttccaacacattaacatctag |
47086919 |
T |
|
| Q |
346 |
gtttcttctgca |
357 |
Q |
| |
|
|||||||||||| |
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| T |
47086920 |
gtttcttctgca |
47086931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 47086556 - 47086596
Alignment:
| Q |
143 |
aacatcaacaccacacccttcatcgttggcctgagaaaagg |
183 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
47086556 |
aacatcaacaacacacccttcattgttggcctgagaaaagg |
47086596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 585
Target Start/End: Complemental strand, 3035814 - 3035783
Alignment:
| Q |
554 |
atgttttgaggctttatgtcacaatgaatgat |
585 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
3035814 |
atgttttgaggctttatgtcacaatgaatgat |
3035783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 606
Target Start/End: Complemental strand, 4107456 - 4107407
Alignment:
| Q |
557 |
ttttgaggctttatgtcacaatgaatgattggtgcctcacattcttcatg |
606 |
Q |
| |
|
||||||||||||||||||||||||||||| || | ||||| |||||||| |
|
|
| T |
4107456 |
ttttgaggctttatgtcacaatgaatgatgggagtgtcacactcttcatg |
4107407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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