View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18255_low_32 (Length: 314)
Name: NF18255_low_32
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_low_32 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 312
Target Start/End: Original strand, 37405474 - 37405769
Alignment:
| Q |
17 |
atggttgatttagattgaacacaaattttaagataatttcagaatatattcgacatcagttgggccatcaactttggatcactcgggtcaagtttcaaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37405474 |
atggttgatttagattgaacacaaattttaagataatttcagaatatattcgacatcagttgggccatcaactttggatcactcgggtcaagtttcaaat |
37405573 |
T |
|
| Q |
117 |
gtccaatcctaagagccaagggaatgttgagagtccacataatatgaaaagtgacttgaaaatatgttcatataagtgtacaacacaaatttgaaattag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37405574 |
gtccaatcctaagagccaagggaatgttgagagtccacataatatgaaaagtgacttgaaaatatgttcatataagtgtacaacacaaatttgaaattag |
37405673 |
T |
|
| Q |
217 |
tcccaaaacaaattctaacatacatttcagtgtgtctttgtgcctacaaatctgcattataaatatcttgatgctgcatgcatgctatctgtgctc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37405674 |
tcccaaaacaaattctaacatacatttcagtgtgtctttgtgcctacaaatctgcattataaatatcttgatgctgcatgcatgctatctgggctc |
37405769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University