View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18255_low_34 (Length: 300)
Name: NF18255_low_34
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 10210595 - 10210873
Alignment:
| Q |
16 |
acattttagaagtaaattgaatgttaaaatccaatttataataaaaaactctaatttctagcttcaactaaattttattttgaaagcaaaatcaattata |
115 |
Q |
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| T |
10210595 |
acattttagaagtaaattgaatgttaaaatccaatttataataaaaaactctaatttctagcttcaactaaattttattttgaaagcaaaatcaattata |
10210694 |
T |
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| Q |
116 |
ccaaaaacaactaaacatatctgaaccaattcaacatttttagaatcaattttaacccgaaatgaataatacactcaagcaattattgattcaaatnnnn |
215 |
Q |
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| T |
10210695 |
ccaaaaacaactaaacatatctgaaccaattcaacatttttagaatcaattttaacccgaaatgaataatacactcaagcaattattgattcaaataaaa |
10210794 |
T |
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| Q |
216 |
nnnnttcatagtctcnnnnnnnntatagtagaaatgaaacgatgatgaccacgacgactccacaacgaattcttctcac |
294 |
Q |
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| T |
10210795 |
aaaattcatagtctcaaaaaaaaaatagtagaaatgaaacgatgatgaccacgacgactccacaacgaattcttatcac |
10210873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 172
Target Start/End: Original strand, 10203461 - 10203604
Alignment:
| Q |
29 |
aaattgaatgttaaaatccaatttataataaaaaactctaatttctagcttcaactaaattttattttgaaagcaaaatcaattataccaaaaacaacta |
128 |
Q |
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| T |
10203461 |
aaattgaatgttaaaaccaattttataatttaaagctctaatttttagcttcaagtaaaatttattttgaaagcaaaatcaattttagcgaaaataatta |
10203560 |
T |
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| Q |
129 |
aacatatctgaaccaattcaacatttttagaatcaattttaacc |
172 |
Q |
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| T |
10203561 |
aacatatttaaatcaactctacacttttaaaatcaattttaacc |
10203604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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