View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18255_low_36 (Length: 288)
Name: NF18255_low_36
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_low_36 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 30077732 - 30078019
Alignment:
| Q |
1 |
gaaaattcacctcctccgtctccgatcagcagcatactgcgaaagcggaacaacctcttgaagcggagtagaaagcggcgtcggaagcggggagtttcga |
100 |
Q |
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| T |
30077732 |
gaaaattcacctcctccgtctccgatcagcagcatactgcgaaagcggaacaacctcttgaagcggagtagaaagcggcgtcggaagcggggagtttcga |
30077831 |
T |
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| Q |
101 |
caaacgggacaagagccattaagcttcaaccatgaatcaagacaacatagatgaaagtaatgacgacattcaggcatcatcctcagcatctccgaatcct |
200 |
Q |
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| T |
30077832 |
caaacgggacaagagccattaagcttcaaccatgaatcaagacaacatagatgaaagtaatgacgacattcaggcatcatcctcagcatctccgaatcct |
30077931 |
T |
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| Q |
201 |
tgtactcacacaaacaaatggaacacgtggtgttctgtcctaaaacagttgcgctgtctctgctgaactgaaacctcggatacgaatt |
288 |
Q |
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| T |
30077932 |
tgtactcacacaaacaaatggaacacgtggtgttctgtcctaaaacagttgcgctgtctctgctgaactgaaacctcggatacgaatt |
30078019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 201
Target Start/End: Original strand, 30084255 - 30084356
Alignment:
| Q |
100 |
acaaacgggacaagagccattaagcttcaaccatgaatcaagacaacatagatgaaagtaatgacgacattcaggcatcatcctcagcatctccgaatcc |
199 |
Q |
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| T |
30084255 |
acaaactggacacgaaccattaaccttcaaccatgtatcaacacaatctcgatgaaaatagtggtgacattgcggcatcatcctcaaaatctccgattcc |
30084354 |
T |
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| Q |
200 |
tt |
201 |
Q |
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|| |
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| T |
30084355 |
tt |
30084356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 41 - 229
Target Start/End: Original strand, 10810163 - 10810351
Alignment:
| Q |
41 |
gaaagcggaacaacctcttgaagcggagtagaaagcggcgtcggaagcggggagtttcgacaaacgggacaagagccattaagcttcaaccatgaatcaa |
140 |
Q |
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||||| |||||||| ||||| | ||||||||| | |||||| || | || ||||| ||||||||||||||||| || ||||| |||||||| ||||||| |
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| T |
10810163 |
gaaagtggaacaacttcttgtaacggagtagataacggcgttggcataggtgagttccgacaaacgggacaagaaccgttaagtttcaaccacgaatcaa |
10810262 |
T |
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| Q |
141 |
gacaacatagatgaaagtaatgacgacattcaggcatcatcctcagcatctccgaatccttgtactcacacaaacaaatggaacacgtg |
229 |
Q |
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| T |
10810263 |
gacaacataggtgaaaatagtgtctacattccggcatcatccttaacatctccgaatccttgtactcacacaaacagatcgaacacgtg |
10810351 |
T |
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