View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18255_low_38 (Length: 273)

Name: NF18255_low_38
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18255_low_38
NF18255_low_38
[»] chr2 (7 HSPs)
chr2 (11-258)||(45425215-45425461)
chr2 (110-172)||(13866967-13867029)
chr2 (124-170)||(30552576-30552622)
chr2 (105-179)||(43529772-43529846)
chr2 (110-167)||(757543-757600)
chr2 (107-176)||(14844897-14844966)
chr2 (106-178)||(3059202-3059274)
[»] chr7 (5 HSPs)
chr7 (110-179)||(23214937-23215006)
chr7 (110-178)||(1418502-1418570)
chr7 (110-179)||(31341217-31341286)
chr7 (106-154)||(529469-529517)
chr7 (103-139)||(7644219-7644255)
[»] chr5 (4 HSPs)
chr5 (118-179)||(1084066-1084127)
chr5 (109-178)||(14599290-14599359)
chr5 (100-172)||(11095404-11095476)
chr5 (111-179)||(21782576-21782644)
[»] chr4 (8 HSPs)
chr4 (123-179)||(46187841-46187897)
chr4 (123-178)||(19429402-19429457)
chr4 (110-167)||(23582384-23582441)
chr4 (96-173)||(7367959-7368036)
chr4 (123-167)||(1075552-1075596)
chr4 (118-178)||(2811554-2811614)
chr4 (106-178)||(18020042-18020114)
chr4 (126-166)||(30338550-30338590)
[»] chr8 (3 HSPs)
chr8 (110-173)||(14926901-14926964)
chr8 (139-177)||(4181516-4181554)
chr8 (109-173)||(9700089-9700153)
[»] chr3 (9 HSPs)
chr3 (109-179)||(49845458-49845528)
chr3 (123-179)||(22667485-22667541)
chr3 (123-179)||(22724124-22724180)
chr3 (123-178)||(27795945-27796000)
chr3 (126-172)||(30321953-30321999)
chr3 (118-179)||(29600662-29600723)
chr3 (104-141)||(33120256-33120293)
chr3 (109-154)||(45541678-45541723)
chr3 (107-179)||(11041142-11041214)
[»] chr6 (4 HSPs)
chr6 (118-173)||(32171642-32171697)
chr6 (123-168)||(6963011-6963056)
chr6 (105-173)||(10016711-10016779)
chr6 (123-171)||(24811010-24811058)
[»] scaffold0459 (1 HSPs)
scaffold0459 (110-179)||(6628-6697)
[»] scaffold0366 (1 HSPs)
scaffold0366 (110-179)||(6626-6695)
[»] chr1 (3 HSPs)
chr1 (123-172)||(31517672-31517721)
chr1 (106-167)||(37593599-37593660)
chr1 (105-173)||(25719759-25719827)


Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 45425461 - 45425215
Alignment:
Q  11 cagagaaacaaatgataaatttaatgtaacatgtcaattttctccactaacatccaacataggattctaatggtatcctattgaaaatgacttaaggtct 110  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45425461 cagagaaacaaatgatcaatataatgtaacatgtcaattttctccactaacatccaacataggattctaatggtatcctattgaaaatgacttaaggtct 45425362  T
Q  111 gtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagagtttatgcttttaaagagtcccacatgtgagactctta 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  45425361 gtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagagtttatgctttt-aagagtcccacatgtgagactctta 45425263  T
Q  211 acatatgcaaataacatataacatgtccataagttaagttgttttcaa 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45425262 acatatgcaaataacatataacatgtccataagttaagttgttttcaa 45425215  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 13867029 - 13866967
Alignment:
Q  110 tgtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagaga 172  Q
    ||||||| ||||  ||||||||||||| |||||  |||||||||| ||| |||||||||||||    
T  13867029 tgtttggattgacctatttgagcttatctactgccataaacacttgtgagactgtttgagaga 13866967  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 30552576 - 30552622
Alignment:
Q  124 tatttgagcttatttactgggataaacacttatgaaactgtttgaga 170  Q
    ||||||||||||| |||||| |||| ||||| |||||||||||||||    
T  30552576 tatttgagcttatctactggtataagcacttttgaaactgtttgaga 30552622  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 43529772 - 43529846
Alignment:
Q  105 aggtctgtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagagtttatg 179  Q
    |||||||||||  |||| |||||||||||||| || ||| |||| ||||| ||| |||||||| |||| ||||||    
T  43529772 aggtctgtttgaattgacttatttgagcttatctattggtataagcacttctgacactgtttgggagaatttatg 43529846  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 757600 - 757543
Alignment:
Q  110 tgtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttg 167  Q
    |||||||||||   |||||||||||||||||| | ||||| |||||||| ||||||||    
T  757600 tgtttgggttggcatatttgagcttatttactagcataaatacttatgagactgtttg 757543  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 14844897 - 14844966
Alignment:
Q  107 gtctgtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagagttt 176  Q
    ||||||||||||||| ||||||||  |||| || ||| |||| ||||| |||||||||| || |||||||    
T  14844897 gtctgtttgggttgacttatttgaagttatctattggcataagcacttgtgaaactgttcgatagagttt 14844966  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 3059202 - 3059274
Alignment:
Q  106 ggtctgtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagagtttat 178  Q
    ||||||||||| | || ||||||||| ||||||||    ||||||||||| ||||||||||| ||||| ||||    
T  3059202 ggtctgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggagagcttat 3059274  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 23215006 - 23214937
Alignment:
Q  110 tgtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagagtttatg 179  Q
    ||||||| |||| |||||||| ||||| |||| | |||||||||||||| ||||||||||||| ||||||    
T  23215006 tgtttggattgacttatttgaccttatctactagcataaacacttatgagactgtttgagagaatttatg 23214937  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 1418570 - 1418502
Alignment:
Q  110 tgtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagagtttat 178  Q
    ||||||| |||| |||||||||||||| |||||| |||| |||||||||  ||||||| ||||| ||||    
T  1418570 tgtttggattgacttatttgagcttatctactggcataagcacttatgaggctgtttgtgagagcttat 1418502  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 31341286 - 31341217
Alignment:
Q  110 tgtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagagtttatg 179  Q
    ||||||| |||| |||||||||||| | |||| | |||||||||| | | |||||||| |||||||||||    
T  31341286 tgtttggattgacttatttgagcttttctacttgcataaacacttttaagactgtttgggagagtttatg 31341217  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 529517 - 529469
Alignment:
Q  106 ggtctgtttgggttgagttatttgagcttatttactgggataaacactt 154  Q
    |||||| |||| |||| |||||||||||||| |||||| ||||||||||    
T  529517 ggtctgattggattgacttatttgagcttatctactggcataaacactt 529469  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 7644219 - 7644255
Alignment:
Q  103 taaggtctgtttgggttgagttatttgagcttattta 139  Q
    |||||||||||||| |||| |||||||||||||||||    
T  7644219 taaggtctgtttggattgacttatttgagcttattta 7644255  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 1084066 - 1084127
Alignment:
Q  118 ttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagagtttatg 179  Q
    |||| ||||||||| ||||||||||  |||| ||||| ||||||||||||||||||||||||    
T  1084066 ttgacttatttgagtttatttactgacataagcacttgtgaaactgtttgagagagtttatg 1084127  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 14599290 - 14599359
Alignment:
Q  109 ctgtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagagtttat 178  Q
    |||||||| || |||||||||| |||||||||| | |||||||||| | | | |||||||||||| ||||    
T  14599290 ctgtttggattcagttatttgaacttatttactagcataaacacttgtaagattgtttgagagagcttat 14599359  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 11095404 - 11095476
Alignment:
Q  100 acttaaggtctgtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagaga 172  Q
    |||||||||||||||||  ||  |||||| ||||||| |||||  |||||||||| ||| | |||||||||||    
T  11095404 acttaaggtctgtttggactggtttatttaagcttatctactgacataaacacttgtgatattgtttgagaga 11095476  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 21782576 - 21782644
Alignment:
Q  111 gtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagagtttatg 179  Q
    |||||| |||| ||||||||  |||| |||||| |||||||||| |||  ||||||||||||| |||||    
T  21782576 gtttggcttgacttatttgaaattatctactggcataaacacttgtgaggctgtttgagagagcttatg 21782644  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 46187841 - 46187897
Alignment:
Q  123 ttatttgagcttatttactgggataaacacttatgaaactgtttgagagagtttatg 179  Q
    |||||||||||||| |||||| |||||||||||||| ||||||| |||| |||||||    
T  46187841 ttatttgagcttatctactggcataaacacttatgagactgtttaagagggtttatg 46187897  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 19429402 - 19429457
Alignment:
Q  123 ttatttgagcttatttactgggataaacacttatgaaactgtttgagagagtttat 178  Q
    ||||||||||||||||||||| |||||||||| ||| |||||||| ||||| ||||    
T  19429402 ttatttgagcttatttactggtataaacacttgtgagactgtttgggagagcttat 19429457  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 23582384 - 23582441
Alignment:
Q  110 tgtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttg 167  Q
    ||||||| |||| ||||||||||||||||| ||| |||| ||||||||| ||||||||    
T  23582384 tgtttggattgacttatttgagcttatttattggtataatcacttatgagactgtttg 23582441  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 7367959 - 7368036
Alignment:
Q  96 aatgacttaaggtctgtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagag 173  Q
    ||||| ||| ||||||||||| |||| ||||||||| |||| ||| || |||||| ||| ||| |||||||| |||||    
T  7367959 aatgaattagggtctgtttggattgacttatttgagtttatctacaggcataaacgcttgtgagactgtttgggagag 7368036  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 1075596 - 1075552
Alignment:
Q  123 ttatttgagcttatttactgggataaacacttatgaaactgtttg 167  Q
    |||||||||||||| |||||| |||||||||| |||||| |||||    
T  1075596 ttatttgagcttatctactggcataaacacttgtgaaacagtttg 1075552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 2811614 - 2811554
Alignment:
Q  118 ttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagagtttat 178  Q
    |||| ||||||||| |||| |||||| |||| || |||||| |||||||||||||| ||||    
T  2811614 ttgacttatttgaggttatctactggcataagcatttatgagactgtttgagagagattat 2811554  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 18020114 - 18020042
Alignment:
Q  106 ggtctgtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagagtttat 178  Q
    ||||||||||| | || ||||||||| ||||||||    ||||||||||| ||||||||||| ||||| ||||    
T  18020114 ggtctgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggagagcttat 18020042  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 30338550 - 30338590
Alignment:
Q  126 tttgagcttatttactgggataaacacttatgaaactgttt 166  Q
    ||||||||||| ||||||||||||||||| ||| |||||||    
T  30338550 tttgagcttatctactgggataaacacttgtgagactgttt 30338590  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 14926901 - 14926964
Alignment:
Q  110 tgtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagag 173  Q
    ||||||| |||| |||||||| |||||||||||| |||| ||||| ||| ||||||||||||||    
T  14926901 tgtttggattgacttatttgaacttatttactggcataagcacttgtgagactgtttgagagag 14926964  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 4181516 - 4181554
Alignment:
Q  139 actgggataaacacttatgaaactgtttgagagagttta 177  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  4181516 actggcataaacacttatgagactgtttgagagagttta 4181554  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 9700153 - 9700089
Alignment:
Q  109 ctgtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagag 173  Q
    |||||||| || | |||||||||||||| |||| | |||||||||| ||| ||| ||||||||||    
T  9700153 ctgtttggattaacttatttgagcttatctactagcataaacacttgtgagactatttgagagag 9700089  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 49845458 - 49845528
Alignment:
Q  109 ctgtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagagtttatg 179  Q
    |||||||| |||| |||||||||||||| |||| | ||||| |||||||||||| |||| ||||| |||||    
T  49845458 ctgtttggattgacttatttgagcttatatactagtataaaaacttatgaaactatttgggagagcttatg 49845528  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 22667541 - 22667485
Alignment:
Q  123 ttatttgagcttatttactgggataaacacttatgaaactgtttgagagagtttatg 179  Q
    |||||||||||||| |||||  |||| ||||| ||| ||||||||||||||||||||    
T  22667541 ttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatg 22667485  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 22724180 - 22724124
Alignment:
Q  123 ttatttgagcttatttactgggataaacacttatgaaactgtttgagagagtttatg 179  Q
    |||||||||||||| |||||  |||| ||||| ||| ||||||||||||||||||||    
T  22724180 ttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatg 22724124  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 27795945 - 27796000
Alignment:
Q  123 ttatttgagcttatttactgggataaacacttatgaaactgtttgagagagtttat 178  Q
    |||||||||||||| |||||| |||| ||||| ||||||||||| |||||| ||||    
T  27795945 ttatttgagcttatctactggcataagcacttgtgaaactgtttaagagagcttat 27796000  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 30321953 - 30321999
Alignment:
Q  126 tttgagcttatttactgggataaacacttatgaaactgtttgagaga 172  Q
    |||||||||||||||||  |||||||| |||||||||||||| ||||    
T  30321953 tttgagcttatttactgacataaacacctatgaaactgtttgggaga 30321999  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 29600662 - 29600723
Alignment:
Q  118 ttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagagtttatg 179  Q
    |||| ||||||||| ||||||||||| || |||| |||| | | ||||||||||||||||||    
T  29600662 ttgacttatttgagtttatttactggcatgaacagttattagattgtttgagagagtttatg 29600723  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 33120293 - 33120256
Alignment:
Q  104 aaggtctgtttgggttgagttatttgagcttatttact 141  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  33120293 aaggtctgtttgggttgatttatttgagcttatctact 33120256  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 45541723 - 45541678
Alignment:
Q  109 ctgtttgggttgagttatttgagcttatttactgggataaacactt 154  Q
    |||||||| |||| ||||||||||||||||| ||| ||||||||||    
T  45541723 ctgtttggattgacttatttgagcttatttaatggtataaacactt 45541678  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 11041142 - 11041214
Alignment:
Q  107 gtctgtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagagtttatg 179  Q
    |||||| ||| |||||| |||||||||||| ||||  ||||| ||||| ||  |||||||||||||| |||||    
T  11041142 gtctgtatggattgagtcatttgagcttatctactaagataagcacttgtgggactgtttgagagagcttatg 11041214  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 32171697 - 32171642
Alignment:
Q  118 ttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagag 173  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| ||||||||||||||    
T  32171697 ttgatttattcgagcttatttactggcataaccacttctgacactgtttgagagag 32171642  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 6963011 - 6963056
Alignment:
Q  123 ttatttgagcttatttactgggataaacacttatgaaactgtttga 168  Q
    |||||| |||||||||||||| ||| |||||| |||||||||||||    
T  6963011 ttatttaagcttatttactggcatacacacttgtgaaactgtttga 6963056  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 10016779 - 10016711
Alignment:
Q  105 aggtctgtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagag 173  Q
    |||||||||||| |||  |||||||||||||| ||| || |||||||||| ||| ||| ||| ||||||    
T  10016779 aggtctgtttggattggtttatttgagcttatctacaggcataaacacttgtgagactatttcagagag 10016711  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 24811010 - 24811058
Alignment:
Q  123 ttatttgagcttatttactgggataaacacttatgaaactgtttgagag 171  Q
    |||||||||||||| || ||| |||||||||||||| | ||||||||||    
T  24811010 ttatttgagcttatctattggcataaacacttatgataatgtttgagag 24811058  T

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Target: scaffold0459 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 6697 - 6628
Alignment:
Q  110 tgtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagagtttatg 179  Q
    ||||||| |||| |||||||||||||| || ||| |||| ||||| ||| || ||||||||||| |||||    
T  6697 tgtttggattgacttatttgagcttatatattggtataatcacttgtgagacagtttgagagagattatg 6628  T

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Target: scaffold0366 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 6695 - 6626
Alignment:
Q  110 tgtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagagtttatg 179  Q
    ||||||| |||| |||||||||||||| || ||| |||| ||||| ||| || ||||||||||| |||||    
T  6695 tgtttggattgacttatttgagcttatatattggtataatcacttgtgagacagtttgagagagattatg 6626  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 31517672 - 31517721
Alignment:
Q  123 ttatttgagcttatttactgggataaacacttatgaaactgtttgagaga 172  Q
    ||||||||||||||||||||| |||| ||||| ||| |||||||| ||||    
T  31517672 ttatttgagcttatttactggcataagcacttgtgagactgtttgggaga 31517721  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 37593599 - 37593660
Alignment:
Q  106 ggtctgtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttg 167  Q
    ||||||||||  |||| |||||||||||||| |||||| |||||||||| | | ||||||||    
T  37593599 ggtctgtttgatttgacttatttgagcttatatactggcataaacacttgttagactgtttg 37593660  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 25719827 - 25719759
Alignment:
Q  105 aggtctgtttgggttgagttatttgagcttatttactgggataaacacttatgaaactgtttgagagag 173  Q
    |||||||||||| |||| ||||||||| |||||||||||  ||| || |||||| ||| |||| |||||    
T  25719827 aggtctgtttggattgatttatttgagtttatttactggcttaagcatttatgagactctttgggagag 25719759  T

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