View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18255_low_4 (Length: 784)

Name: NF18255_low_4
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18255_low_4
NF18255_low_4
[»] chr4 (5 HSPs)
chr4 (247-770)||(27249529-27250052)
chr4 (248-770)||(21193756-21194278)
chr4 (12-182)||(27250117-27250287)
chr4 (12-182)||(21194344-21194514)
chr4 (12-182)||(27261946-27262116)
[»] chr6 (3 HSPs)
chr6 (491-589)||(29274263-29274360)
chr6 (491-589)||(33787779-33787876)
chr6 (481-546)||(3785724-3785789)
[»] chr5 (1 HSPs)
chr5 (470-589)||(39105403-39105522)
[»] chr2 (2 HSPs)
chr2 (545-589)||(3102632-3102676)
chr2 (470-587)||(18066069-18066186)
[»] chr1 (2 HSPs)
chr1 (492-539)||(28482268-28482315)
chr1 (482-539)||(25005822-25005879)
[»] chr7 (2 HSPs)
chr7 (493-539)||(25670622-25670668)
chr7 (529-598)||(46081963-46082032)
[»] chr3 (1 HSPs)
chr3 (618-652)||(11607073-11607107)
[»] chr8 (1 HSPs)
chr8 (486-583)||(33209249-33209345)


Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 247 - 770
Target Start/End: Complemental strand, 27250052 - 27249529
Alignment:
Q  247 cgatgtaaaaacagaattttattattttgagcagagttacttgtcaaaattttaaaaaccattatgtatcacatcagttttaagagtttcaacaaattta 346  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27250052 cgatgtaaaaagagaattttattattttgagcagagttacttgtcaaaattttaaaaaccattatgtatcacatcagttttaagagtttcaacaaattta 27249953  T
Q  347 caactcagagtccttctccctctatcttagaccttaggactctttgaattcatttattttagtttatctgctgatttaagcacttctgattatgaaaaca 446  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27249952 caactcagagtcattctccctctatcttaaaccttaggactctttgaattcatttattttagtttatctgctgatttaagcacttctgattatgaaaaca 27249853  T
Q  447 gtttctgacaatgacatgactacaagctattttcacttgtttttataagctctccaagatatcttataaaaacggatgatagcttatatgaaatcagttt 546  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||    
T  27249852 gtttctgacaatgacatgactacaagctattttcacttgtttttataagctctccgagatagcttataaaaacggatgatagcttatatgaagtcagttt 27249753  T
Q  547 tgactttatgttatatttcactataaaaatagcttatacataatcacatataagataagcatcaagcgcttatctataagtgctcaactaagatgtctat 646  Q
    ||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27249752 tgactttattttatattttactataaaaatagcttatatataatcacatataagataagcatcaagcgcttatctataagtgctcaactaagatgtctat 27249653  T
Q  647 ccaaaagtatctgatacttttactactagcaaccatttttcatacaagaaagtgttcttacaatgtatcaatttgatcgtcaaagctagtttgaagaatt 746  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27249652 ccaaaagtatcttatacttttactactagcaaccatttttcatacaagaaagtgttcttacaatgtatcaatttgattgtcaaagctagtttgaagaatt 27249553  T
Q  747 aaaacaaattataagtgtgaatca 770  Q
    ||||||||||||||||||||||||    
T  27249552 aaaacaaattataagtgtgaatca 27249529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 248 - 770
Target Start/End: Complemental strand, 21194278 - 21193756
Alignment:
Q  248 gatgtaaaaacagaattttattattttgagcagagttacttgtcaaaattttaaaaaccattatgtatcacatcagttttaagagtttcaacaaatttac 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21194278 gatgtaaaaacagaattttattattttgagcagagttacttgtcaaaattttaaaaaccattatgtatcacatcacttttaagagtttcaacaaatttac 21194179  T
Q  348 aactcagagtccttctccctctatcttagaccttaggactctttgaattcatttattttagtttatctgctgatttaagcacttctgattatgaaaacag 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21194178 aactcagagtccttctccctctatcttagaccttaggactctttgaattcatttattttagtttatctgctgatttaagcacttatgattatgaaaacag 21194079  T
Q  448 tttctgacaatgacatgactacaagctattttcacttgtttttataagctctccaagatatcttataaaaacggatgatagcttatatgaaatcagtttt 547  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  21194078 tttctgacaatgacatgactacaagctattttcacttgtttttataagctctccaagatagtttataaaaacggatgatagcttatatgaaatcagtttt 21193979  T
Q  548 gactttatgttatatttcactataaaaatagcttatacataatcacatataagataagcatcaagcgcttatctataagtgctcaactaagatgtctatc 647  Q
    |||||||| |||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  21193978 gactttattttatcttttactataaaaatagcttatacataatcacatataagatatgcatcaagcgcttatctataagtgctcaactaagatttctatc 21193879  T
Q  648 caaaagtatctgatacttttactactagcaaccatttttcatacaagaaagtgttcttacaatgtatcaatttgatcgtcaaagctagtttgaagaatta 747  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21193878 caaaagtatcttatacttttactactagcaaccatttttcatacaagaaagtgttcttacaatgtatcaatttgattgtcaaagctagtttgaagaatta 21193779  T
Q  748 aaacaaattataagtgtgaatca 770  Q
    |||||||||||||||||||||||    
T  21193778 aaacaaattataagtgtgaatca 21193756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 27250287 - 27250117
Alignment:
Q  12 cagagatataatctccaagagatggaactgtcacaagaagggtacgccatgcttggcggttagcttcagtgttttctagcccaattgaagccaaacgctt 111  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27250287 cagagatatagtctccaagagatggaactgtcacaagaagggtacgccatgcttggcggttagcttcagtgttttctagcccaattgaagccaaacgctt 27250188  T
Q  112 tccacatgtagcattggattcatccatggctaaaataccacgccctggtgaagcaattgttttctgcatcc 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27250187 tccacatgtagcattggattcatccatggctaaaataccacgccctggtgaagcaattgttttctgcatcc 27250117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 21194514 - 21194344
Alignment:
Q  12 cagagatataatctccaagagatggaactgtcacaagaagggtacgccatgcttggcggttagcttcagtgttttctagcccaattgaagccaaacgctt 111  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21194514 cagagatatagtctccaagagatggaactgtcacaagaagggtacgccatgcttggcggttagcttcagtgttttctagcccaattgaagccaaacgctt 21194415  T
Q  112 tccacatgtagcattggattcatccatggctaaaataccacgccctggtgaagcaattgttttctgcatcc 182  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21194414 tccacatgtagcattggattcatccatggctaaaattccacgccctggtgaagcaattgttttctgcatcc 21194344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 27262116 - 27261946
Alignment:
Q  12 cagagatataatctccaagagatggaactgtcacaagaagggtacgccatgcttggcggttagcttcagtgttttctagcccaattgaagccaaacgctt 111  Q
    ||||||| || ||||||||||||||||||||||| ||||| |||||||||||| |||||||| |||| ||||| ||||||||||||||||||||||  ||    
T  27262116 cagagatgtactctccaagagatggaactgtcaccagaagagtacgccatgctgggcggttaacttcggtgttctctagcccaattgaagccaaactttt 27262017  T
Q  112 tccacatgtagcattggattcatccatggctaaaataccacgccctggtgaagcaattgttttctgcatcc 182  Q
     ||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  27262016 cccacaagtagcattggactcatccatggccaaaataccacgtcctggtgaagcaattgttttctgcatcc 27261946  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 491 - 589
Target Start/End: Original strand, 29274263 - 29274360
Alignment:
Q  491 ataagctctccaagatatcttataaaaacggatgatagcttatatgaaatcagttttgactttatgttatatttcactataaaaatagcttatacataa 589  Q
    |||||||| |||  ||||||||| ||||| | | ||||||||||||||| || ||| |||||||| |||| |||  ||||| |||||||||||||||||    
T  29274263 ataagctcgccacaatatcttatgaaaacagtttatagcttatatgaaaacaattt-gactttattttatcttttgctatagaaatagcttatacataa 29274360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 491 - 589
Target Start/End: Original strand, 33787779 - 33787876
Alignment:
Q  491 ataagctctccaagatatcttataaaaacggatgatagcttatatgaaatcagttttgactttatgttatatttcactataaaaatagcttatacataa 589  Q
    ||||||||||||||||| ||||| ||||| | | ||| ||||||||||||||  ||||||||| | ||||||||   |||| |||||| ||||||||||    
T  33787779 ataagctctccaagataacttatgaaaacagcttataacttatatgaaatca-atttgactttgttttatattttgttatagaaatagtttatacataa 33787876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 546
Target Start/End: Original strand, 3785724 - 3785789
Alignment:
Q  481 acttgtttttataagctctccaagatatcttataaaaacggatgatagcttatatgaaatcagttt 546  Q
    ||||||||||||||||||||||  ||| |||| |||||| | | |||||||||| |||| ||||||    
T  3785724 acttgtttttataagctctccagaatagcttacaaaaacagcttatagcttatacgaaaacagttt 3785789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 470 - 589
Target Start/End: Complemental strand, 39105522 - 39105403
Alignment:
Q  470 aagctattttca-cttgtttttataagctctccaagatatcttataaaaacggatgatagcttatatgaaatcagttttgactttatgttatatttcact 568  Q
    |||||||||| | ||| |||| ||||| ||||||||||| ||||| ||||| ||| |||||||||| |||| ||  ||| |||| || | ||||||  ||    
T  39105522 aagctatttttagcttattttcataagttctccaagatagcttatgaaaacagattatagcttatacgaaaaca-atttaacttcatttcatatttagct 39105424  T
Q  569 ataaaaatagcttatacataa 589  Q
    ||| |||||||||||||||||    
T  39105423 atagaaatagcttatacataa 39105403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 545 - 589
Target Start/End: Complemental strand, 3102676 - 3102632
Alignment:
Q  545 tttgactttatgttatatttcactataaaaatagcttatacataa 589  Q
    ||||||||||| ||||||||  |||||||||||||||||||||||    
T  3102676 tttgactttattttatattttgctataaaaatagcttatacataa 3102632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 470 - 587
Target Start/End: Complemental strand, 18066186 - 18066069
Alignment:
Q  470 aagctattttcac-ttgtttttataagctctccaagatatcttataaaaacggatgatagcttatatgaaatcagttttgactttatgttatatttcact 568  Q
    ||||||||||||| || ||||  |||| ||||||||||| ||||| ||||| | | ||||||||||||||| ||  ||| ||||||| | |||||| |||    
T  18066186 aagctattttcaccttattttcttaagttctccaagatagcttatgaaaacagcttatagcttatatgaaaaca-atttaactttatttcatattttact 18066088  T
Q  569 ataaaaatagcttatacat 587  Q
     || ||||||||| |||||    
T  18066087 gtagaaatagcttctacat 18066069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 539
Target Start/End: Original strand, 28482268 - 28482315
Alignment:
Q  492 taagctctccaagatatcttataaaaacggatgatagcttatatgaaa 539  Q
    |||||||||||||||| ||||||||||| | | |||||||||||||||    
T  28482268 taagctctccaagataacttataaaaacagcttatagcttatatgaaa 28482315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 482 - 539
Target Start/End: Original strand, 25005822 - 25005879
Alignment:
Q  482 cttgtttttataagctctccaagatatcttataaaaacggatgatagcttatatgaaa 539  Q
    ||||||||||||||||||||| |||| ||||| |||||   | |||||||||||||||    
T  25005822 cttgtttttataagctctccaggatagcttatgaaaacaacttatagcttatatgaaa 25005879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 493 - 539
Target Start/End: Original strand, 25670622 - 25670668
Alignment:
Q  493 aagctctccaagatatcttataaaaacggatgatagcttatatgaaa 539  Q
    |||||||||||||||| ||||||||||   |||||||||||||||||    
T  25670622 aagctctccaagatatgttataaaaacaattgatagcttatatgaaa 25670668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 529 - 598
Target Start/End: Complemental strand, 46082032 - 46081963
Alignment:
Q  529 cttatatgaaatcagttttgactttatgttatatttcactataaaaatagcttatacataatcacatata 598  Q
    ||||||||||| ||||||||||||| | |||  ||||  |||| |||||||||||| |||||||| ||||    
T  46082032 cttatatgaaaacagttttgactttgttttaactttcgttatagaaatagcttatatataatcacttata 46081963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 618 - 652
Target Start/End: Original strand, 11607073 - 11607107
Alignment:
Q  618 atctataagtgctcaactaagatgtctatccaaaa 652  Q
    ||||||||||||| |||||||||||||||||||||    
T  11607073 atctataagtgcttaactaagatgtctatccaaaa 11607107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 486 - 583
Target Start/End: Original strand, 33209249 - 33209345
Alignment:
Q  486 tttttataagctctccaagatatcttataaaaacggatgatagcttatatgaaatcagttttgactttatgttatatttcactataaaaatagcttat 583  Q
    ||||||||||||||||   ||| ||||||||||  | | |||| |||||||||| ||| || |||||||| |||| ||||| |||| |||||||||||    
T  33209249 tttttataagctctccggaatagcttataaaaatagcttatagtttatatgaaaacag-ttcgactttattttatctttcattatagaaatagcttat 33209345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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