View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18255_low_41 (Length: 256)
Name: NF18255_low_41
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_low_41 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 4597219 - 4596977
Alignment:
| Q |
17 |
accatccaacactttcaacaaaccaaaa-tgtctaaatcaattcccttgcttgacaccaaaatgatttctatggcctatgttgtaaaaacaaaagccaat |
115 |
Q |
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| T |
4597219 |
accatccaacaatttcaacaaaccaaaaatgtctaaatcaattcccttgcttcaaaccaaaatgatctctatggcctatgttgtaaaaacaaaagccaat |
4597120 |
T |
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| Q |
116 |
ttcaatcacaccctccatgtgacatgatagttgaaaattggttgtttgtaaaaataggagagaaaaaagaatgaagattcagattatataaaatcaacct |
215 |
Q |
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| T |
4597119 |
ttcaatcacaccctccatgtgacatgatagttgaaaattggttgtttgtaaaaataggagagaaaaaagaatgaagattcagattatataaaatcaacct |
4597020 |
T |
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| Q |
216 |
ctata--tatagaataacatgcccaaaataaaccatgtttgtg |
256 |
Q |
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| T |
4597019 |
ctatatatatagaataacatgcccaaaataaaccatgtttgtg |
4596977 |
T |
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