View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18255_low_50 (Length: 215)
Name: NF18255_low_50
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 37841351 - 37841532
Alignment:
| Q |
15 |
cagagacggcatcttttctacgtgagataatgaatgaacatgannnnnnnatagttgggagaagacatgaaactcaatctcctcaaacagatggattggc |
114 |
Q |
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| T |
37841351 |
cagaaacggcatcttttctacgtgagataatgaatgaacatgatttttttatagttgggagaagacatgaaactcaatctcctcaaacagatggattggc |
37841450 |
T |
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| Q |
115 |
agaatggagtgaatttccagaacttggagctattggtgattttcttgcttcacccgatcttaatagcagtgcatctgttttg |
196 |
Q |
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| T |
37841451 |
agaatggagtgaatttccagaacttggagctattggtgattttcttgcttcacccgatcttaatagtagtgcatctgttttg |
37841532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 38380900 - 38380727
Alignment:
| Q |
23 |
gcatcttttctacgtgagataatgaatgaacatgannnnnnnatagttgggagaagacatgaaactcaatctcctcaaacagatggattggcagaatgga |
122 |
Q |
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| T |
38380900 |
gcatcttttctacgtgagattgtgaacgaacatgatttctttatagttgggagaagacatgaaactcaatctcctcaaactgatggattagcagaatgga |
38380801 |
T |
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| Q |
123 |
gtgaatttccagaacttggagctattggtgattttcttgcttcacccgatcttaatagcagtgcatctgttttg |
196 |
Q |
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| T |
38380800 |
gtgaatttccagaacttggtgctattggtgattttcttgcttcacctgatcttaatagtagtgcatctgttttg |
38380727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 38389766 - 38389593
Alignment:
| Q |
23 |
gcatcttttctacgtgagataatgaatgaacatgannnnnnnatagttgggagaagacatgaaactcaatctcctcaaacagatggattggcagaatgga |
122 |
Q |
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|||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| |
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| T |
38389766 |
gcatcttttctacgtgagattgtgaacgaacatgatttctttatagttgggagaagacatgaaactcaatatcctcaaaccgatggattagcagaatgga |
38389667 |
T |
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| Q |
123 |
gtgaatttccagaacttggagctattggtgattttcttgcttcacccgatcttaatagcagtgcatctgttttg |
196 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | ||||||||||||| |
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| T |
38389666 |
gtgaatttccagaacttggtgctattggtgattttcttgcttcacctgatcttaatagtaatgcatctgttttg |
38389593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 38398529 - 38398356
Alignment:
| Q |
23 |
gcatcttttctacgtgagataatgaatgaacatgannnnnnnatagttgggagaagacatgaaactcaatctcctcaaacagatggattggcagaatgga |
122 |
Q |
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|||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
38398529 |
gcatcttttctacgtgagattgtgaacgaacatgatttctttatagttgggagaagacatgaaactcaatctcctcaaactgatggattagcagaatgga |
38398430 |
T |
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| Q |
123 |
gtgaatttccagaacttggagctattggtgattttcttgcttcacccgatcttaatagcagtgcatctgttttg |
196 |
Q |
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|||||||||||||||| || ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||| |
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| T |
38398429 |
gtgaatttccagaactcggtgctattggtgattttcttgtttcacctgatcttaatagtagtgcatctgttttg |
38398356 |
T |
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