View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18255_low_6 (Length: 692)
Name: NF18255_low_6
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Original strand, 37202002 - 37202390
Alignment:
| Q |
18 |
aatttggcatattctgagtgtgacaagtatcaaaacttggatattctagcatatgccatgtgtatctgcagcaagtgtgcttcaatttcgtccttctcat |
117 |
Q |
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| T |
37202002 |
aatttggcatattctgagtgtgacaagtatcaaaacttggatattctagcatatgccatgtgtatctgcagcaagtgtgcttcaatttcgtccttctcat |
37202101 |
T |
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| Q |
118 |
cattttaccaacttacccttcaacaactgaaacacacctgcatgcatcatttgttaaacttccttttccttcaaatccacttgggattacgtaatttttt |
217 |
Q |
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| T |
37202102 |
cattttaccaacttacccttcaacaactgaaacacacctgcatgcatcatttgttaaacttccttttccttcaaatccacttgggattacgtaatttttt |
37202201 |
T |
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| Q |
218 |
gcctttattattactaactcattaaacttcacttgcattcacacacagtaccttttactacgccaattgtacctaaaagattcttatattccaaccaatc |
317 |
Q |
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| T |
37202202 |
gcctttattattactaactcattaaacttcacttgcatt----cacagtaccttttactacgccaattgtacctaaaagattcttatattccaaccaatc |
37202297 |
T |
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| Q |
318 |
ataccatttaatatatttattactttgtaacaaatgttatgatgtaagaaactctaaaaactataaaaaccaacacactcctttcatgtcaat |
410 |
Q |
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| T |
37202298 |
ataacatttaatatatttattactttgtaacaaatgttatgatgtaagaaactctaaaaactataaaaaccaacacactcctttcatgtcaat |
37202390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 439 - 682
Target Start/End: Original strand, 37202419 - 37202662
Alignment:
| Q |
439 |
acagtaacgtgttgtgtactttgcgttcaagtagagaattatctgaaattgatcgttgattccgaccgatgtcgtcggagccgttgattcaatcgtctga |
538 |
Q |
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| T |
37202419 |
acagtaacgtgttgtgtactttgcgttcaagtagagaattatctgaaattgatcgttgattccgacctatgtcgtcggagccgttgattcaatcgtctga |
37202518 |
T |
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| Q |
539 |
ttcagtatcagcatcccggcaatgcggagaaccggtgaggattttcgaggaattgcccaaagccagtattgtctccgtttcgcgaccggagacgggagaa |
638 |
Q |
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| T |
37202519 |
ttcagtatcagcatcccggcaatgcggagaaccggtgaggattttcgaggaattgcccaaagccagtattgtctccgtttcgcgaccggagacgggagaa |
37202618 |
T |
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| Q |
639 |
ataagcccgattctactttcctatacaattgagttgcagtataa |
682 |
Q |
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| T |
37202619 |
ataagcccgattctactttcctatacaattgagttgcagtataa |
37202662 |
T |
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