View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18255_low_7 (Length: 650)
Name: NF18255_low_7
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 1 - 606
Target Start/End: Original strand, 40667791 - 40668397
Alignment:
| Q |
1 |
agaacatagacatctcatgacttctcaaattggccaaaagcaaaatcaatgtgcgtttctaccaaaatcttcaggtgcaccaattctatgtgttggttgt |
100 |
Q |
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| T |
40667791 |
agaacatagacatctcatgacttctcaaattggccaaaagcaaaatcaatgtgtgtttctaccaaaatcttcaggtgcaccaattctatgtgttggttgt |
40667890 |
T |
|
| Q |
101 |
ggaataaggacagagttatctatcaaggagtcaaataggttcagctattctgaaatacagcttgcaacaaatgatttttcaaaggataacttaataggtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40667891 |
ggaataaggacagagttatctatcaaggagtcaaataggttcagctattctgaaatacagcttgcaacaaatgatttttcaaaggataacttaataggtg |
40667990 |
T |
|
| Q |
201 |
aaggtggatatggtcatgtatataagggtgttcttaaagatggacaacaaatagctgcaaaagtaaggaaagaagaaagtgcacaagggttttctgaatt |
300 |
Q |
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| T |
40667991 |
aaggtggatatggtcatgtatataagggtgttcttaaagatggacaacaaatagctgcaaaagtaaggaaagaagaaagtgcacaagggttttctgaatt |
40668090 |
T |
|
| Q |
301 |
tcattctgaggtttatgtcttgagttttgctagacacaagaatatagtgatgctgttggggtattgttgcaaagaaaataaaaatattctcatatatgaa |
400 |
Q |
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| T |
40668091 |
tcattctgaggtttatgtcttgagttttgctagacacaagaatatagtgatgctgttggggtattgttgcaaagaaaataaaaatattctcatatatgaa |
40668190 |
T |
|
| Q |
401 |
tatatttgcaataagtctcttcattggcatttatttggtaagtgccttatgttgttttatcttatcttcaagtctaac-aagtatactttaaaggcactc |
499 |
Q |
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| T |
40668191 |
tatatttgcaataagtctcttcattggcatttatttggtaagtgccttatgttgttttatcttatcttcaagtctaacaaagtatactttaaaggcactc |
40668290 |
T |
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| Q |
500 |
taaggtttttattttgttgtagaaaatagtgaagcagttcttgattggtctcaaagatatggtattgcacttgggattgcaaagggattgcgttttctac |
599 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40668291 |
taagatttttattttgttgtagaaaatagtgaagcagttcttgattggtctcaaagatatggtattgcacttgggattgcaaagggattgcgttttctac |
40668390 |
T |
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| Q |
600 |
atgagga |
606 |
Q |
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| T |
40668391 |
atgagga |
40668397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 303 - 437
Target Start/End: Original strand, 4301683 - 4301817
Alignment:
| Q |
303 |
attctgaggtttatgtcttgagttttgctagacacaagaatatagtgatgctgttggggtattgttgcaaagaaaataaaaatattctcatatatgaata |
402 |
Q |
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||||||| || ||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
4301683 |
attctgaagtgtatgtcttgagttttgctagatacaagaatatagtgatgttgttggggtactgttgcaaagaaaataaaaatattatcatatatgaatt |
4301782 |
T |
|
| Q |
403 |
tatttgcaataagtctcttcattggcatttatttg |
437 |
Q |
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| T |
4301783 |
tatttgcgataagtctcttcattggtatttatttg |
4301817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 521 - 578
Target Start/End: Original strand, 4301817 - 4301874
Alignment:
| Q |
521 |
gaaaatagtgaagcagttcttgattggtctcaaagatatggtattgcacttgggattg |
578 |
Q |
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||||||||||||| |||| |||||||| ||| |||||||||||||||||||||||||| |
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| T |
4301817 |
gaaaatagtgaagtagttattgattggcctcgaagatatggtattgcacttgggattg |
4301874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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