View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18255_low_8 (Length: 557)

Name: NF18255_low_8
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18255_low_8
NF18255_low_8
[»] chr3 (2 HSPs)
chr3 (3-367)||(55383193-55383557)
chr3 (365-439)||(19341907-19341979)
[»] chr4 (2 HSPs)
chr4 (372-549)||(53730768-53730944)
chr4 (368-447)||(53731276-53731353)
[»] chr2 (2 HSPs)
chr2 (457-549)||(596765-596859)
chr2 (367-447)||(597190-597268)
[»] chr8 (2 HSPs)
chr8 (367-447)||(26936796-26936874)
chr8 (400-546)||(26937205-26937344)


Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 3 - 367
Target Start/End: Original strand, 55383193 - 55383557
Alignment:
Q  3 gcaacaacggtggacacaccgtagttattgttcagagttgcctccaacttctggtagtcaccggaattgttccctaacccctggttcaagaaataaaaaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55383193 gcaacaacggtggacacaccgtagttattgttcagagttgcctccaacttctggtagtcaccggaattgttccctaacccctggttcaagaaataaaaaa 55383292  T
Q  103 ccaaatgaatgcgatgtgaggagcggtgataatatagatatagagaaagagaaagagagactaaccgggagaatgacggcgggtcgatagttattggtgn 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  55383293 ccaaatgaatgcgatgtgaggagcggtgataatatagatatagagaaagagaaagagagactaaccgggagaatgacggcgggtcgatagttattggtgg 55383392  T
Q  203 nnnnnnnnnnnnnnnnnnnnngcagtgagcatttggatggaattggagaggctgacatccattttgctccacaagttaacattactgctcgctcactctg 302  Q
                         || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55383393 aagaagatgaagaagaagaaggccgtgagcatttggatggaattggagaggctgacatccattttgctccacaagttaacattactgctcgctcactctg 55383492  T
Q  303 cttcccttacttcctctccacccatttctttgcattctctttctattctataaataaataagtaa 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55383493 cttcccttacttcctctccacccatttctttgcattctctttctattctataaataaataagtaa 55383557  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 365 - 439
Target Start/End: Original strand, 19341907 - 19341979
Alignment:
Q  365 taagagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacata 439  Q
    ||||||||||||||||||| |||||| |||||||  ||||||||||| |||| ||||||||||||||||||||||    
T  19341907 taagagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcagccaataacattttgccacata 19341979  T

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Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 372 - 549
Target Start/End: Original strand, 53730768 - 53730944
Alignment:
Q  372 ttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatctttttnnnnnnnnntgttaatttattcaa 471  Q
    |||||||||||| |||||| |||||||  ||||||||||| |||  ||||||||  |||| | |||||||| ||||         |||||||||||||||    
T  53730768 ttaattgtggtgcactgaccgtgtaaa--agaactttacacagttagccaataaattttttcaacataatcctttttaaaaaaaatgttaatttattcaa 53730865  T
Q  472 taaaaggtaaattctgaaggtgtgcctctccacgttcttgtc--agttgtgtcgttactctccccattcttctctctgct 549  Q
    ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||    
T  53730866 taaaaggtaaattctgaaggtgtgcctctccacgttcttgtctttgttgtgtcgttactc-ccccattcttctctctgct 53730944  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 447
Target Start/End: Complemental strand, 53731353 - 53731276
Alignment:
Q  368 gagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatcttttt 447  Q
    |||||||||||||||| |||||| |||||||  ||||||||||| ||||  |||||||||||||||||||||||| ||||    
T  53731353 gagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcaaccaataacattttgccacataatcctttt 53731276  T

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Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 457 - 549
Target Start/End: Original strand, 596765 - 596859
Alignment:
Q  457 tgttaatttattcaataaaaggtaaattctgaaggtgtgcctctccacgttcttgtc--agttgtgtcgttactctccccattcttctctctgct 549  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||| |||||| ||||    
T  596765 tgttaatttatacaataaaaggtaaattctgaaggtgtgcctctccacgttcttgtctttgttgtgtcgttactccccccattattctctatgct 596859  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 367 - 447
Target Start/End: Complemental strand, 597268 - 597190
Alignment:
Q  367 agagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatcttttt 447  Q
    ||||||||||||||||| |||||| |||||||  ||||||||||| |||| | ||||||||||||||||||||||| ||||    
T  597268 agagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcagtcaataacattttgccacataatcctttt 597190  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 367 - 447
Target Start/End: Original strand, 26936796 - 26936874
Alignment:
Q  367 agagtttaattgtggtggactgacggtgtaaagaagaactttacatagtcggccaataacattttgccacataatcttttt 447  Q
    ||||||||||||||||| |||||| |||||||  ||||||||||| |||| ||||||||||||||||||||||||| ||||    
T  26936796 agagtttaattgtggtgcactgactgtgtaaa--agaactttacacagtcagccaataacattttgccacataatcctttt 26936874  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 400 - 546
Target Start/End: Complemental strand, 26937344 - 26937205
Alignment:
Q  400 aagaactttacatagtcggccaataacattttgccacataatctttttnnnnnnnnntgttaatttattcaataaaaggtaaattctgaaggtgtgcctc 499  Q
    ||||| |||||| |||| |||||||| |||||||||||||||| ||||         |||||||||||||||||||||||||        ||||||||||    
T  26937344 aagaaatttacacagtcagccaataaaattttgccacataatcctttttaaaaaaa-tgttaatttattcaataaaaggtaa--------ggtgtgcctc 26937254  T
Q  500 tccacgttcttgtc--agttgtgtcgttactctccccattcttctctct 546  Q
    ||||||||||||||   ||||||||||||||| ||||||| || |||||    
T  26937253 tccacgttcttgtctttgttgtgtcgttactccccccatttttttctct 26937205  T

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