View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18255_low_9 (Length: 524)
Name: NF18255_low_9
Description: NF18255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18255_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 31 - 513
Target Start/End: Original strand, 52725042 - 52725519
Alignment:
| Q |
31 |
acaataagggtattatggtgcggagagaccggagtcttggtggaaaagaggtggttattggattgagtcccattcacagcacaacccctgcgcttccgat |
130 |
Q |
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| T |
52725042 |
acaataagggtattatggtgcggagagaccggagtcttggtggaaaagaggtggttattggattgagtcccattcacagcacaacccctgctctgccgat |
52725141 |
T |
|
| Q |
131 |
taaactgtctttgaagaatagtaataataataaggttgtttctcaaaggagattacccaaatggtggccacctattaacaacagcaatgtcaatgctttt |
230 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
52725142 |
taaacgttctttgaagaatagtaataataataaggttgtttctcaaaggaaattacccaaatggtggccacctattaacaacaacaatgtcaatgctttt |
52725241 |
T |
|
| Q |
231 |
gatatggacctaaatgagcaagatgaatacaagagggatgcttacagactcgttcgatgtctgtctttctttcttccttcctttaacactc-ttttttat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
52725242 |
gatatggacctaaatgagcaagatgaatacaagagggatgcttacagactcgttcgatgtctgtcttt--------cttcctttaacactctttttttat |
52725333 |
T |
|
| Q |
330 |
atttttactgttcatttaatcaaggatcaatttagttcctaaaca--ttcattctttctccaatttactttcaactctcatgagatttactaactaatgt |
427 |
Q |
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|||||||||||||||||||| | | || ||||| | | | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52725334 |
atttttactgttcatttaattcatgttc-atttaatcaatgatcaatttcattctttctccaatttactttcaactctcatgagatttactaactaatgt |
52725432 |
T |
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| Q |
428 |
attgttggtaaatatactcttctcactcatgatttatctactgttttctcatcctttaattct-tacttgcaacttattcccttcat |
513 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52725433 |
attgttggtaaatatacccttctcactcatgatttatctactgttttctcatcctttaattctctacttgcaacttattcccttcat |
52725519 |
T |
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