View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18256_high_1 (Length: 456)

Name: NF18256_high_1
Description: NF18256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18256_high_1
NF18256_high_1
[»] chr5 (25 HSPs)
chr5 (4-409)||(30748801-30749206)
chr5 (16-409)||(30677708-30678101)
chr5 (9-395)||(29871349-29871735)
chr5 (19-395)||(30482577-30482953)
chr5 (10-395)||(30242926-30243311)
chr5 (1-409)||(30434977-30435385)
chr5 (8-409)||(30713962-30714375)
chr5 (2-395)||(30339079-30339472)
chr5 (10-407)||(30399229-30399638)
chr5 (9-395)||(30059520-30059918)
chr5 (11-409)||(29852464-29852874)
chr5 (8-191)||(4380820-4381003)
chr5 (181-297)||(17418821-17418937)
chr5 (216-292)||(30474742-30474818)
chr5 (166-289)||(30205833-30205956)
chr5 (323-409)||(17418697-17418783)
chr5 (329-409)||(30206008-30206088)
chr5 (248-281)||(30522299-30522332)
chr5 (248-281)||(30562639-30562672)
chr5 (10-80)||(30205674-30205747)
chr5 (59-100)||(17419018-17419059)
chr5 (251-284)||(30430351-30430384)
chr5 (319-387)||(17982400-17982468)
chr5 (113-208)||(29709670-29709766)
chr5 (319-363)||(30474854-30474898)
[»] chr4 (2 HSPs)
chr4 (4-409)||(20297131-20297548)
chr4 (319-363)||(52351439-52351483)
[»] chr7 (2 HSPs)
chr7 (4-296)||(26706490-26706782)
chr7 (318-407)||(26706816-26706905)
[»] chr1 (6 HSPs)
chr1 (319-395)||(7098897-7098973)
chr1 (169-294)||(7098735-7098860)
chr1 (319-387)||(7582281-7582349)
chr1 (169-285)||(7582395-7582511)
chr1 (11-80)||(7582597-7582666)
chr1 (20-80)||(7098589-7098649)


Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 4 - 409
Target Start/End: Original strand, 30748801 - 30749206
Alignment:
Q  4 taagtcgagtacctccagagatgagaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccatataagataatctc 103  Q
    ||||| |||| |||| ||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||  | |||||||     
T  30748801 taagttgagttcctctagagatgggaaaacgctcacctccataccatactcagattcatcatcatccaagtatttcagattattcataccatataatctt 30748900  T
Q  104 agnnnnnnnagagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagttcaagagaaattaaattactaagaataattatcc 203  Q
    ||       ||||||||||||||||||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  30748901 agtttttttagagatggtagtttaccaagtaacggaagccgcacaattttgttgcaaatctcaagttcaagagaaattaaattactaagaataattatcc 30749000  T
Q  204 aacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaaccgtaga 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30749001 aacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaaccgtaga 30749100  T
Q  304 tttctccttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacatctcttaat 403  Q
    || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||    
T  30749101 ttcctccttgtatacccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaat 30749200  T
Q  404 cctttg 409  Q
    ||||||    
T  30749201 cctttg 30749206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 409
Target Start/End: Complemental strand, 30678101 - 30677708
Alignment:
Q  16 ctccagagatgagaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccatataagataatctcagnnnnnnnaga 115  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||       |||    
T  30678101 ctccagagatgggaaaaccctcaccttcataccatcctcagattcatcatcatccaagtatttcagattattcatacgagataatctcagtctttttaga 30678002  T
Q  116 gatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagttcaagagaaattaaattactaagaataattatccaacttggtaacg 215  Q
    ||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30678001 gatggtagtttaccacgtaacggaagccgcacaattttgttgcattcctcaagttcaagagaaattaaattactaagaataattatccaacttggtaacg 30677902  T
Q  216 ataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaaccgtagatttctccttgta 315  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  30677901 ataatctttcatagtaatttattgtcaagcatttgagatttgagtgaggtttaagcacttcaagtacttgctcagcactaaccgtagattcctccttgta 30677802  T
Q  316 tccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacatctcttaatcctttg 409  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||  ||||||   |||||||||||    
T  30677801 tccccatgacaagcataattcatgaaggtcttttttatccatcaatttagccgcttcagcttcagataaactagcaacattgtttaatcctttg 30677708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 395
Target Start/End: Original strand, 29871349 - 29871735
Alignment:
Q  9 cgagtacctccagagatgagaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccatataagataatctcagnnn 108  Q
    ||||| |||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||       
T  29871349 cgagttcctccagagatgggaaaatcctcacctccataccatcctgagattcatcatcatccaagtatttcagattatccatataagataattccagttt 29871448  T
Q  109 nnnnagagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagttcaagagaaattaaattactaagaataattatccaactt 208  Q
        ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  29871449 ttttagagatggtagtttaccaagtaacggaagccgcacaatcttgttgcaatcctcaagtttaagagaaattaaattactaagaataattatccaactt 29871548  T
Q  209 ggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaaccgtagatttct 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||   |||||| ||    
T  29871549 ggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaattatagattcct 29871648  T
Q  309 ccttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacat 395  Q
      |   ||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29871649 gttgcgatatccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacat 29871735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 395
Target Start/End: Original strand, 30482577 - 30482953
Alignment:
Q  19 cagagatgagaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccatataagataatctcagnnnnnnnagagat 118  Q
    |||||||  ||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||       ||||||    
T  30482577 cagagatcggaaaaccatcacctccacaccatcctgagattcatcatcatccaagtatttcagattatccatataagataattccagtttttttagagat 30482676  T
Q  119 ggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagttcaagagaaattaaattactaagaataattatccaacttggtaacgata 218  Q
    ||||||||||||||||| ||||||||||||||||||||||| | |  |||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  30482677 ggtagtttaccaagtaacggaagccgcacaattttgttgcaattccgaagttcaagagaaattaaattactaagaaggcttatccaacttggtaacgata 30482776  T
Q  219 atccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaaccgtagatttctccttgtatcc 318  Q
    | ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||   |||||| ||  | | ||      
T  30482777 acccttcattgtaatttattgtcaagcatttgagatttgagtgaggttgaagctcttcaagtacttgctcagcactaattatagattcctgttgggatat 30482876  T
Q  319 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacat 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  30482877 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacat 30482953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 10 - 395
Target Start/End: Complemental strand, 30243311 - 30242926
Alignment:
Q  10 gagtacctccagagatgagaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccatataagataatctcagnnnn 109  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   |||||  |||        
T  30243311 gagtacctctagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccatttcgaataattccagtttt 30243212  T
Q  110 nnnagagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagttcaagagaaattaaattactaagaataattatccaacttg 209  Q
       ||| ||||||||||||||||||| ||||||||||||||||||||||| | |  ||||||||||||||||||||||||||||| ||||||||||||||    
T  30243211 tttagatatggtagtttaccaagtaacggaagccgcacaattttgttgcaattccgaagttcaagagaaattaaattactaagaagaattatccaacttg 30243112  T
Q  210 gtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaaccgtagatttctc 309  Q
    |||| |||||||| |||||| || ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||  |     
T  30243111 gtaaggataatccctcatagaaacttattttcaagcacttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaattatagattcatg 30243012  T
Q  310 cttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacat 395  Q
     | | ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30243011 ttgggatatccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacat 30242926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 30434977 - 30435385
Alignment:
Q  1 atgtaagtcgagtacctccagagatgagaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccatataagataat 100  Q
    |||||| ||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  | ||| |    
T  30434977 atgtaattcgagtacctccaaagatgggaaagccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattcataccatatact 30435076  T
Q  101 ctcagnnnnnnnagagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagttcaagagaaattaaattactaagaataatta 200  Q
    || ||       ||||||||||||||||||| ||| ||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||    
T  30435077 ctaagtttttttagagatggtagtttaccaaataacggaagccgcacaattttgttgcaatccccaagtttaagagaaattaaattactaagaataatta 30435176  T
Q  201 tccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaaccgt 300  Q
    |||||||||||||||||||||| |||||| |||||||   |||||| |||||||||||||||||||||||| |||| |||| ||||||||  ||||   |    
T  30435177 tccaacttggtaacgataatccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtaattgctcagatctaattat 30435276  T
Q  301 agatttctccttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacatctctt 400  Q
    ||||| ||  |   ||  ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||   ||    
T  30435277 agattcctgttgcgatatccacgacaagcataattcatgaaggtcttttttacccttcaaattagccgcttcagcttcagataaactaccaacattgttt 30435376  T
Q  401 aatcctttg 409  Q
    |||||||||    
T  30435377 aatcctttg 30435385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 409
Target Start/End: Complemental strand, 30714375 - 30713962
Alignment:
Q  8 tcgagtacctccagagatgagaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccatataagataatctcagnn 107  Q
    ||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  | ||||||||||      
T  30714375 tcgagtatctccagagaggggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattgataccatataatctcagtt 30714276  T
Q  108 nnnnnagagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagttcaagagaaattaaattactaagaataattatccaact 207  Q
         ||||||||||||||||||||||| ||||||||||||||||| ||||| |    |||| ||||||||| |||||||||||||||||||||||||||    
T  30714275 tttttagagatggtagtttaccaagtaacggaagccgcacaattttcttgcaatggagaagtacaagagaaactaaattactaagaataattatccaact 30714176  T
Q  208 tggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaa----------c 297  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||          |    
T  30714175 tggtaatgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaacaacaggggtc 30714076  T
Q  298 cgtagatttc--tccttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacat 395  Q
      | || |||  |  |||| |  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  30714075 tttggaattccttgtttgtctttccatgacaagtataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcaaataaactgccaacat 30713976  T
Q  396 ctcttaatcctttg 409  Q
       |||||||||||    
T  30713975 tgtttaatcctttg 30713962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 395
Target Start/End: Complemental strand, 30339472 - 30339079
Alignment:
Q  2 tgtaagtcgagtacctccagagatgagaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccatataagataatc 101  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  | ||| ||    
T  30339472 tgtaagtagagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattcatacgatatactc 30339373  T
Q  102 tcagnnnnnnnagagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagttcaagagaaattaaattactaagaataattat 201  Q
    | ||       |||||||||||||||||||||||  ||||| |||||||||||||||| | |  ||| | |||||||||||||||||||||||   ||||    
T  30339372 taagattttttagagatggtagtttaccaagtaactgaagcagcacaattttgttgcaattccaaagattaagagaaattaaattactaagaaggcttat 30339273  T
Q  202 ccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaaccgta 301  Q
    |||||||||||||||||||||||||||| |||||| ||||||| | |||||||||||||||||||||||| |||| || ||||||||||||||||   ||    
T  30339272 ccaacttggtaacgataatccttcatagaaatttactgtcaaggaattgagatttgagtgaggttgaagctcttcgagcacttgctcagcactaattata 30339173  T
Q  302 gatttctccttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacat 395  Q
    |||| ||  |   ||  ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  30339172 gattcctgttgcgatatccacgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacat 30339079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 10 - 407
Target Start/End: Original strand, 30399229 - 30399638
Alignment:
Q  10 gagtacctccagagatgagaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccatataagataatctcagnnnn 109  Q
    |||| |||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||  |||        
T  30399229 gagttcctccagagatgggaaaaccctcacctccacaccatcctgagattcatcatcatccaagtatttcagattatccatatcagataattccagtttt 30399328  T
Q  110 nnnagagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagttcaagagaaattaaattactaagaataattatccaacttg 209  Q
       ||||| ||||||||||||| |||  |||| ||||||| ||| ||||| | | ||||||||||||||| |||||||||||||||||||||||||||||    
T  30399329 tttagagacggtagtttaccaattaactgaagtcgcacaactttcttgcaattcccaagttcaagagaaactaaattactaagaataattatccaacttg 30399428  T
Q  210 gtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaaccgt----agatt 305  Q
    |||| |||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||  ||     ||||    
T  30399429 gtaatgataatccgtcatagtaatttattttcaagcacttgagatttgagtgaggttgaagcacttcgagtacttgctgagcactaatagttgggggatt 30399528  T
Q  306 ------tc--tccttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacatct 397  Q
          ||  |  |||  | ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||| ||||    
T  30399529 ggtaaatccatagttgctttcccatgacaagcataattcatgaaggtcttttttacccatcaaatcagccgcttgagcttgagataaactgccaaaatct 30399628  T
Q  398 cttaatcctt 407  Q
     |||| ||||    
T  30399629 tttaagcctt 30399638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 9 - 395
Target Start/End: Original strand, 30059520 - 30059918
Alignment:
Q  9 cgagtacctccagagatgagaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccatataagataatctcagnnn 108  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||       
T  30059520 cgagttcctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccatataagataattccaggtt 30059619  T
Q  109 nnnnagagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagttcaagagaaattaaattactaagaataattatccaactt 208  Q
        | |||||||||| ||||||||||  |||||||||||| ||| || ||   || ||||| |||||||| ||||||||||||||||||||||||||||    
T  30059620 ttttaaagatggtagtataccaagtaactgaagccgcacaactttcttacaacgcttaagtttaagagaaactaaattactaagaataattatccaactt 30059719  T
Q  209 ggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaaccgtagatttc- 307  Q
    || || |||||||| |||||| || ||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||   ||  |||     
T  30059720 ggcaaggataatccctcatagaaacttattttcaagcagttgagatttgagtgaggttgaagaacttcaagtacttgctcaacactaacaacagggttct 30059819  T
Q  308 -------tcc----ttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacat 395  Q
           |||    |||| |  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||    
T  30059820 ttggaattccttgtttgtctttccatgacaagtataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcaaataacctgccaacat 30059918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 11 - 409
Target Start/End: Original strand, 29852464 - 29852874
Alignment:
Q  11 agtacctccagagatgagaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccatataagataatctcagnnnnn 110  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |   |||||  ||          
T  29852464 agtatctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatctaagtatttcagattatccattttgaataataccaactttt 29852563  T
Q  111 nnagagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagttcaagagaaattaaattactaagaataattatccaacttgg 210  Q
      ||| |||||||||||| |||||| ||||||||||||||||||||||| | |  ||||||||||||||||||| |||||||||   |||||||||||||    
T  29852564 ttagatatggtagtttacaaagtaacggaagccgcacaattttgttgcaattccgaagttcaagagaaattaaactactaagaaggcttatccaacttgg 29852663  T
Q  211 taacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaa------------cc 298  Q
    |||||||||||||||||||||||||||   |||||| |||||||||||||||||||||||| |||| |||||||||||| ||  ||            |     
T  29852664 taacgataatccttcatagtaatttatgtccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctcatcatgaatagttgggggctca 29852763  T
Q  299 gtagatttctccttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacatctc 398  Q
    ||| ||   || |||  | |||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||     
T  29852764 gtaaatccatcattgctttcccatgacaaacataattcatgaatgtctgttttacccatcaaattagccgcttcagcttcagataaactgcccacatctt 29852863  T
Q  399 ttaatcctttg 409  Q
    |||| ||||||    
T  29852864 ttaagcctttg 29852874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 4380820 - 4381003
Alignment:
Q  8 tcgagtacctccagagatgagaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccatataagataatctcagnn 107  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||  | |||||  ||       
T  4380820 tcgagtacctccagagatgggaaaaccctcacctccataccatcctcaaattcatcatcatccaagtatttcagattatccgtacgaaataattccaatt 4380919  T
Q  108 nnnnnagagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagttcaagagaaattaaattactaa 191  Q
         ||||||| ||||||||||||| | ||||||||||||| |||||||||  |   ||||| ||||||||||||||||||||    
T  4380920 tttttagagatgttagtttaccaagtgacggaagccgcacaactttgttgcaaacacaaagtttaagagaaattaaattactaa 4381003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 181 - 297
Target Start/End: Complemental strand, 17418937 - 17418821
Alignment:
Q  181 taaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagt 280  Q
    |||||||||||||||| ||||||||||||||||| ||| ||| ||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||    
T  17418937 taaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttgagtgaggttgaagcacttcaagt 17418838  T
Q  281 acttgctcagcactaac 297  Q
    | |||||||||||||||    
T  17418837 agttgctcagcactaac 17418821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 292
Target Start/End: Original strand, 30474742 - 30474818
Alignment:
Q  216 ataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagca 292  Q
    ||||||| |||||||||  |||| |||| |  ||||||||||||||||||||||||| |||||||||||||||||||    
T  30474742 ataatccgtcatagtaaagtattttcaacctcttgagatttgagtgaggttgaagcatttcaagtacttgctcagca 30474818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 166 - 289
Target Start/End: Original strand, 30205833 - 30205956
Alignment:
Q  166 aagttcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggt 265  Q
    |||| |||||| || ||||||||| |||||| ||||||||||||||||  ||||||  | ||||| |   ||| |||| |  ||||||||||||||||||    
T  30205833 aagtacaagagcaactaaattactgagaatacttatccaacttggtaagaataatctgttatagtgacaaattatcaacctcttgagatttgagtgaggt 30205932  T
Q  266 tgaagcacttcaagtacttgctca 289  Q
    ||||||||||||| || |||||||    
T  30205933 tgaagcacttcaaatagttgctca 30205956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 409
Target Start/End: Complemental strand, 17418783 - 17418697
Alignment:
Q  323 gacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacatctcttaatcctttg 409  Q
    |||||||||||||| || |||||||||||||| ||||| |||||  ||| |||||||| |||| | ||||||||| |||| ||||||    
T  17418783 gacaagcataattcttggaggtcttttttacctatcaacttagcttcttgagcttcagataaattaccaacatcttttaagcctttg 17418697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 409
Target Start/End: Original strand, 30206008 - 30206088
Alignment:
Q  329 cataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacatctcttaatcctttg 409  Q
    |||||||| || ||||||||||||||||||||||| || |||| |||||||| |||||| | ||||||  |||| ||||||    
T  30206008 cataattcctggaggtcttttttacccatcaaattggctgcttgagcttcagataaactacaaacatcatttaaacctttg 30206088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 30522332 - 30522299
Alignment:
Q  248 ttgagatttgagtgaggttgaagcacttcaagta 281  Q
    ||||||||||||||||||||||||||||||||||    
T  30522332 ttgagatttgagtgaggttgaagcacttcaagta 30522299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 30562672 - 30562639
Alignment:
Q  248 ttgagatttgagtgaggttgaagcacttcaagta 281  Q
    ||||||||||||||||||||||||||||||||||    
T  30562672 ttgagatttgagtgaggttgaagcacttcaagta 30562639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 30205674 - 30205747
Alignment:
Q  10 gagtacctccagagatgagaaaaccctcacctccataccatcctcaga---ttcatcatcatccaagtatttca 80  Q
    ||||||||||||||||| ||||| |||| || | |||||||| | |||   |||||||||||||||||||||||    
T  30205674 gagtacctccagagatgggaaaatcctcgccacaataccatcttgagattcttcatcatcatccaagtatttca 30205747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 17419059 - 17419018
Alignment:
Q  59 tcatcatcatccaagtatttcagattatccatataagataat 100  Q
    |||||||||||||||||||||||||| | ||| |||||||||    
T  17419059 tcatcatcatccaagtatttcagatttttcatgtaagataat 17419018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 30430351 - 30430384
Alignment:
Q  251 agatttgagtgaggttgaagcacttcaagtactt 284  Q
    ||||||||||||| ||||||||||||||||||||    
T  30430351 agatttgagtgagattgaagcacttcaagtactt 30430384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 387
Target Start/End: Original strand, 17982400 - 17982468
Alignment:
Q  319 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaact 387  Q
    |||||||| |||||||||||  |||||||||||||| || ||||| ||  ||||| |||||| ||||||    
T  17982400 ccatgacaggcataattcattgaggtcttttttacctataaaatttgcttcttcaacttcagataaact 17982468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 208
Target Start/End: Complemental strand, 29709766 - 29709670
Alignment:
Q  113 agagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagttcaagag-aaattaaattactaagaataattatccaactt 208  Q
    |||||| |||||||||||| | | ||||| ||||||   || ||||| || | ||||||||||| ||| |||||||||||||||| |||| ||||||    
T  29709766 agagatagtagtttaccaaatgaaggaaggcgcacacaattcttgcaatctttaagttcaagagcaaactaaattactaagaatacttattcaactt 29709670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 30474854 - 30474898
Alignment:
Q  319 ccatgacaagcataattcatgaaggtcttttttacccatcaaatt 363  Q
    |||||||||| ||||||| || ||||| |||||||||||||||||    
T  30474854 ccatgacaaggataattcttggaggtcctttttacccatcaaatt 30474898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 4 - 409
Target Start/End: Complemental strand, 20297548 - 20297131
Alignment:
Q  4 taagtcgagtacctccagagatgagaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccatataagataatctc 103  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||| ||||  ||||| | ||    
T  20297548 taagtcgagtacctccagagatgggaaaaccctcacctccctaccatcccgagattcatcatcatccaagtatttcagattatacataccagatattgtc 20297449  T
Q  104 agnnnnnnnagagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagttcaagagaaattaaattactaagaataattatcc 203  Q
    ||       ||||||||||||||||||| ||| |||||| ||||||||| |||||| | ||||||||||| ||||| |||||||||||||||||||||||    
T  20297448 agtttttttagagatggtagtttaccaattaacggaagctgcacaatttcgttgcaattctcaagttcaaaagaaactaaattactaagaataattatcc 20297349  T
Q  204 aacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaac------ 297  Q
    ||||||||||| | ||||| |||||| ||||||||  |||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||| ||          
T  20297348 aacttggtaaccacaatccatcatagcaatttatttccaagcacttgagatttgactgaggttgaagcacttcgagtactttctcagcacttacagttgg 20297249  T
Q  298 ------cgtagatttctccttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgcca 391  Q
           ||| |||| || |||  | |||| ||||||||||||||||||||||||||||||||||||||||| ||  ||| |||||||| || |||||||    
T  20297248 tggcttggtaaatttatcattgctttcccaagacaagcataattcatgaaggtcttttttacccatcaaattggcttcttgagcttcagatatactgcca 20297149  T
Q  392 acatctcttaatcctttg 409  Q
    |||||| |||| ||||||    
T  20297148 acatcttttaagcctttg 20297131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 52351439 - 52351483
Alignment:
Q  319 ccatgacaagcataattcatgaaggtcttttttacccatcaaatt 363  Q
    |||||||| |||||||||  | |||||||||||||||||||||||    
T  52351439 ccatgacaggcataattctcggaggtcttttttacccatcaaatt 52351483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 4 - 296
Target Start/End: Original strand, 26706490 - 26706782
Alignment:
Q  4 taagtcgagtacctccagagatgagaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccatataagataatctc 103  Q
    ||||| |||||||| |||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||  |    
T  26706490 taagtggagtaccttcagagatgggaaaaccctcacctccatgccatcctgagattcatcatcatccaagtatttcagattaaccatagaagataattcc 26706589  T
Q  104 agnnnnnnnagagatggtagtttaccaagtaatggaagccgcacaattttgttgcagtcctcaagttcaagagaaattaaattactaagaataattatcc 203  Q
    ||       ||||||||||||||||||||||| ||||||||||||| ||| ||||| ||| ||||||||||||||| |||||||||||||||| ||| ||    
T  26706590 agtttttctagagatggtagtttaccaagtaacggaagccgcacaaatttcttgcaatccccaagttcaagagaaactaaattactaagaatacttaccc 26706689  T
Q  204 aacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaa 296  Q
    |||||||||| |||||||| || ||||| ||||||  |||||| ||||||||||||||||||||||||||||  ||||  |||||| ||||||    
T  26706690 aacttggtaatgataatccgtcgtagtactttatttccaagcacttgagatttgagtgaggttgaagcactttgagtagctgctcaacactaa 26706782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 26706816 - 26706905
Alignment:
Q  318 cccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacatctcttaatcctt 407  Q
    ||||||||||||||||||  |  |||| |||||| ||||||||||| ||  ||| |||||||| |||||||||||||||| |||| ||||    
T  26706816 cccatgacaagcataatttttcgaggttttttttccccatcaaattggcttcttgagcttcagataaactgccaacatcttttaagcctt 26706905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 395
Target Start/End: Original strand, 7098897 - 7098973
Alignment:
Q  319 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaactgccaacat 395  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||| ||  ||| |||||||| |||||| |||||||    
T  7098897 ccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacat 7098973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 294
Target Start/End: Original strand, 7098735 - 7098860
Alignment:
Q  169 ttcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttga 268  Q
    |||||||| || ||||||||||||| |  | ||||||||||| ||  |||||||||  ||  ||| |||| ||||||  ||||||||||  |||||||||    
T  7098735 ttcaagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttga 7098834  T
Q  269 agcacttcaagtacttgctcagcact 294  Q
    |||||||||| |||||| ||| ||||    
T  7098835 agcacttcaattacttgatcatcact 7098860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 387
Target Start/End: Complemental strand, 7582349 - 7582281
Alignment:
Q  319 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagctaaact 387  Q
    ||||||||||||||||||||  |||||||||||||||||||| || ||  ||| |||||||| ||||||    
T  7582349 ccatgacaagcataattcatcgaggtcttttttacccatcaagttggcttcttgagcttcagataaact 7582281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 285
Target Start/End: Complemental strand, 7582511 - 7582395
Alignment:
Q  169 ttcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttga 268  Q
    |||||||| || |||||||| |||| |  | ||||||||||| ||  |||| ||||  ||  ||| |||| ||||||  |||||||||| ||||||||||    
T  7582511 ttcaagagtaactaaattaccaagagttctgatccaacttgggaagcataaacctttgtaaaaatctattttcaagctcttgagatttgtgtgaggttga 7582412  T
Q  269 agcacttcaagtacttg 285  Q
    |||||||||||||||||    
T  7582411 agcacttcaagtacttg 7582395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 7582666 - 7582597
Alignment:
Q  11 agtacctccagagatgagaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttca 80  Q
    |||||||| ||||||| |||||  ||||| |||| |||||  | | ||||||||||||||||||||||||    
T  7582666 agtacctcaagagatgggaaaattctcacttccaaaccattgtgaaattcatcatcatccaagtatttca 7582597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 7098589 - 7098649
Alignment:
Q  20 agagatgagaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttca 80  Q
    ||||||| ||||| ||| |||||||||||||  | | |||||| |||||||||||||||||    
T  7098589 agagatgggaaaatccttacctccataccattgtgaaattcattatcatccaagtatttca 7098649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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