View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18256_low_3 (Length: 256)
Name: NF18256_low_3
Description: NF18256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18256_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 394653 - 394430
Alignment:
| Q |
20 |
caagagaccaatttcagacacattcaacaatacataatgtgatccaaatttagaaattcccaaattnnnnnnngtcttcaaattcagaaagtttcaatcc |
119 |
Q |
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| T |
394653 |
caagagaccaatttcagacacagtcaaaaatacataatgtgatccaaatttagaaattcccaaattaaaaaaagtcttcaaattcagaaagtttcaatcc |
394554 |
T |
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| Q |
120 |
cacaaaagttaaaaatagaaaccaacatcaagaaacttcattcgcaaggcatcatcaacatagtataaaaatttgatttttacaacttttctctagaacc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
394553 |
cacaaaagttaaaaatagaaaccaacatcaagaaacttcattcacaaggcatcatcaacatagtataaaaatttgatttttacaacttttctctagaacc |
394454 |
T |
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| Q |
220 |
catgattgttcatgaagaataatc |
243 |
Q |
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|||||||||||||||||||||||| |
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| T |
394453 |
catgattgttcatgaagaataatc |
394430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 19765206 - 19764980
Alignment:
| Q |
20 |
caagagaccaatttcagacacattcaacaatacataatgtgatc-----caaatttagaaattcccaaattnnnnnnngtcttcaaattcagaaagtttc |
114 |
Q |
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| T |
19765206 |
caagagaccaatttcagacacaatcaacaatacataatgtgattatgatccaatttagaaaatcccaaattaaaaaaagtcttcaaattcagaaagtttc |
19765107 |
T |
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| Q |
115 |
aatcccacaaaagttaaaaatagaaaccaacatcaagaaacttcattcgcaaggcatcatcaacatagtataaaaatttgatttttacaacttttctcta |
214 |
Q |
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| T |
19765106 |
aattccacaaaaga-aaaaatagaaacaaa-atcaagaaacttcattcacaaggcatcatcaacatagtataaaaatttgatttttacaacttttttcta |
19765009 |
T |
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| Q |
215 |
gaacccatgattgttcatgaagaataatc |
243 |
Q |
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| T |
19765008 |
gaacctatgattgtttatgaagaataatc |
19764980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 19764923 - 19764865
Alignment:
| Q |
186 |
aaaaatttgatttttacaacttttctctagaacccatgattg-ttcatgaagaataatc |
243 |
Q |
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||||| ||||||||||||| ||||||| ||||||||| |||| || ||||||||||||| |
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| T |
19764923 |
aaaaaattgatttttacaagttttctcaagaacccattattgttttatgaagaataatc |
19764865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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