View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18257_high_13 (Length: 229)
Name: NF18257_high_13
Description: NF18257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18257_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 47583450 - 47583647
Alignment:
| Q |
16 |
acagaagacactaactatatttgagattggtgttccaattgttgtttcactgacgctgttagtctttggatgttgttgctttctatatagaaaagtacca |
115 |
Q |
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| T |
47583450 |
acagaagacactaactatatttgagattggtgttccaattgttgtttcactgatgctgttagtctttggatgttgttgctttctatatagaaaagtacca |
47583549 |
T |
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| Q |
116 |
aagaatcagcatgatattctcaaagaaagctgtaatgtggaaaaatatactactatttgcatataaaaagaggcatttcttttagccatataacttat |
213 |
Q |
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| T |
47583550 |
aagaatcagcatgatattctcaaagaaagctgtaatgtggaaaaatatactactatttgcatataaaaagaggcatttcttttagccatataacttat |
47583647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 47573757 - 47573954
Alignment:
| Q |
16 |
acagaagacactaactatatttgagattggtgttccaattgttgtttcactgacgctgttagtctttggatgttgttgctttctatatagaaaagtacca |
115 |
Q |
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| T |
47573757 |
acagaagacacttacaataattgtgattattgttccgattgttgtttcactggtacttttagttttgggaagcggttgctttctatatagaaaagacaga |
47573856 |
T |
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| Q |
116 |
aagaatcagcatgatattctcaaagaaagctgtaatgtggaaaaatatactactatttgcatataaaaagaggcatttcttttagccatataacttat |
213 |
Q |
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| T |
47573857 |
aagaatcagcatgatattctcaaagaaagctgcaatgtggaaaaatgtatttctatttgcaaacaaaaagatgcatttcctttaaccatataacttat |
47573954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 213
Target Start/End: Original strand, 47566945 - 47567067
Alignment:
| Q |
91 |
ttgctttctatatagaaaagtaccaaagaatcagcatgatattctcaaagaaagctgtaatgtggaaaaatatactactatttgcatataaaaagaggca |
190 |
Q |
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|||| ||||||||||||||| | ||||||| ||||||||||||||||| ||||||||||||| |||||||||||| ||||||||| | |||| || ||| |
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| T |
47566945 |
ttgcattctatatagaaaagaaagaaagaatgagcatgatattctcaaataaagctgtaatgtagaaaaatatacttctatttgcaaacaaaaggaagca |
47567044 |
T |
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| Q |
191 |
tttcttttagccatataacttat |
213 |
Q |
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|||| |||| |||| |||||||| |
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| T |
47567045 |
tttcctttaaccatgtaacttat |
47567067 |
T |
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