View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18257_low_1 (Length: 660)
Name: NF18257_low_1
Description: NF18257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18257_low_1 |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 1e-70; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 426 - 636
Target Start/End: Complemental strand, 15886287 - 15886075
Alignment:
| Q |
426 |
cccaaccctaataaacccaacatagataaacgaagttttatttgaaaactaaacgtggaacaacaaatttagaaagtccttagctctactactatccaac |
525 |
Q |
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| T |
15886287 |
cccaaccctaataaacccaacaaagataaacaaagttttatttgaaaagtaaatgtgaaataacaaatttagaaagtccttagctctactacaatccaac |
15886188 |
T |
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| Q |
526 |
aaagttttcttttacttgcatggttta---taccatagaaggaagaggagtagtaggtatcaagtacaagtcatcttttcttttgatggtaactccaaat |
622 |
Q |
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| T |
15886187 |
aaagttttcttttgcttgcatggtttatcttaccata-taggaagaggagcagtaggtatcaagtacaagtcatcttttcttttgacggtcgctccaaat |
15886089 |
T |
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| Q |
623 |
tgctcagtcatgtc |
636 |
Q |
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| T |
15886088 |
tgctcggtcatgtc |
15886075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 559 - 636
Target Start/End: Original strand, 12609715 - 12609792
Alignment:
| Q |
559 |
agaaggaagaggagtagtaggtatcaagtacaagtcatcttttcttttgatggtaactccaaattgctcagtcatgtc |
636 |
Q |
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| T |
12609715 |
agaaggaagaggagctgtaggtatcaaatacaagtcatcttttcttttgacggtcgctccaaattgctcagtcatgtc |
12609792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 558 - 643
Target Start/End: Original strand, 12636810 - 12636895
Alignment:
| Q |
558 |
tagaaggaagaggagtagtaggtatcaagtacaagtcatcttttcttttgatggtaactccaaattgctcagtcatgtccaaatcc |
643 |
Q |
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| T |
12636810 |
tagaaggaagaggaatagtgggtatcaagtacaagtcactttttcttttaacattagccccaaattgctcagtcatgtccaaatcc |
12636895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 316
Target Start/End: Complemental strand, 15886511 - 15886397
Alignment:
| Q |
203 |
gttcacatatgagccacatacatgaaaaaggtaaatgtttacacatcgatttacttatcaatatggatattttaa-gaccaacatattagtcccaacgag |
301 |
Q |
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| T |
15886511 |
gttcacacatgcgccatatacatgaaaaacgtaaatgtttactcattgatttacttaccatcgtggatgctctaaggaccaaattattagtcccaacacg |
15886412 |
T |
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| Q |
302 |
tatgaataaccttat |
316 |
Q |
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| T |
15886411 |
tatgaatgaccttat |
15886397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 12609116 - 12609149
Alignment:
| Q |
10 |
catcatcaaaaatagatttccactcattttggct |
43 |
Q |
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| T |
12609116 |
catcatcaaaaacagatttccactcattttggct |
12609149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 567 - 639
Target Start/End: Original strand, 61971 - 62043
Alignment:
| Q |
567 |
gaggagtagtaggtatcaagtacaagtcatcttttcttttgatggtaactccaaattgctcagtcatgtccaa |
639 |
Q |
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| T |
61971 |
gaggagcaataggtatcaagtacaagtcatcttttcttttaactgtcactccaaatttctcagtcatgtccaa |
62043 |
T |
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