View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18257_low_13 (Length: 281)
Name: NF18257_low_13
Description: NF18257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18257_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 25296003 - 25295722
Alignment:
| Q |
1 |
tctgtttcttggtccatataaaaatttgttagtatgtttttcacattgaattaatttcatgaatagataatagggttttcgatttcatgaatatctttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25296003 |
tctgtttcttggtccatataaaaatttgttagtatgtttttcacattgaattaatttcatgaatagataatagggttttcgatttcatgaatatctttca |
25295904 |
T |
|
| Q |
101 |
atgttatgtttttgactttgtttggttgtattaaatgtgaaaagaatagatggattggtgtatttttgtagggatgttatcacgttgttattcttgagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25295903 |
atgttatgtttttgactttgtttggttgtattaaatgtgaaaagaatagatggattggtgtatttttgtagggatgttatcaagttgttattcttgagat |
25295804 |
T |
|
| Q |
201 |
ttctgtatgatttaatgagcaatgattaaaa---tgttcactcatatgattaggat----tatgattaatgcttcttttcac |
275 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25295803 |
ttctgtatgatttaattagcaatgattaaaatattgttcactcatatgattaggattatatatgattaatgcttcttttcac |
25295722 |
T |
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