View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18257_low_14 (Length: 246)
Name: NF18257_low_14
Description: NF18257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18257_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 26746598 - 26746392
Alignment:
| Q |
14 |
agtgtcatatataagaacgtttgtgtagttcaactgttttgagttaaatgttaacgggtttgaggttcaaggttcaaattttgaaaaggagaacaaatgt |
113 |
Q |
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| T |
26746598 |
agtgtcatatataagaacgtttgtgtagttcaactgttttgagttaaatgttaaagagtttgaggttcagggtccaaattctgacaaggagaacaaatgt |
26746499 |
T |
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| Q |
114 |
tcagatatagctcaggatatgcataaatgttaaatctcttgagggagagttttgacattcaatgtggtcttatctaactcgatgaattaatctatacaat |
213 |
Q |
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| T |
26746498 |
tcagatctagctcagggtatgcataaatgttaaatctcttgagtgagagttttgacattcaatgtggtcttatctaactcgatgaattaatctatacagt |
26746399 |
T |
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| Q |
214 |
tacgcgc |
220 |
Q |
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| T |
26746398 |
tacgcgc |
26746392 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 36639508 - 36639454
Alignment:
| Q |
141 |
tgttaaatctcttgagggagagttttgacattcaatgtggtcttatctaactcga |
195 |
Q |
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||||||||||||||||||||||||||| |||| | | ||||| |||||||||||| |
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| T |
36639508 |
tgttaaatctcttgagggagagttttgtcatttattatggtcatatctaactcga |
36639454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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