View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18257_low_4 (Length: 512)
Name: NF18257_low_4
Description: NF18257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18257_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Original strand, 10405698 - 10406168
Alignment:
| Q |
19 |
aataattttttagaaaatattttgtcgtccaacctatttaattgacaaagatcaccatgaaattgttgcctcaatacatgaattgaaaccaaccataagt |
118 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
10405698 |
aataatttttgagaaaatattttgtcgtccaacctatttaatcgacaaaggtcaccatgaaatttttgcctcagtacatgaattgaaaccaaccataagt |
10405797 |
T |
|
| Q |
119 |
accttatttgctgacacttgg-tgtggaaagataatttaaatggagaatacatgacaaaaagtgtgtatcgctggctcttatctcggagggatggtattg |
217 |
Q |
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|
||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
10405798 |
accttatctgctgacacttgggtgtggaaagataatttaaatggagaatacacgacaaaaagtgtgtatcgctggctcttatctcggaggcatgttattg |
10405897 |
T |
|
| Q |
218 |
tctcactgaagaaatgaaattggatttggaagttactactttcgactagtgtggaattttttacctgacatgtttgtaataactatttcaactaaatatg |
317 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10405898 |
tctcactgaagaaatggaattggatttggaagttaccactttcagctagtatggaattttttacctgacatgtttgtaataactatttcaactaaatatg |
10405997 |
T |
|
| Q |
318 |
tcctacaccatcgagagatgaatgtttctggtacacgtccatgttgtaacagggaagatgaatctattcttcattgcttcatccattgtccaagagtggt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10405998 |
tcctacaccatcgagagatgaatgtttctggtacacgtccatgttgtaacggggaagatgaatctattcttcattgcttcatccattgtccacgagtggt |
10406097 |
T |
|
| Q |
418 |
tgcagtgttggtttggatgtggattctctaacgagtcttcattgtgcactaataatctctcgagttatatgagagat |
494 |
Q |
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||||||||||||| |||||||||| ||| ||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
10406098 |
tgcagtgttggtt------tggattctctgacgtgtcttcattgtgcgctaataatctctcgagtaatatgagagat |
10406168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 367
Target Start/End: Original strand, 10402330 - 10402359
Alignment:
| Q |
338 |
aatgtttctggtacacgtccatgttgtaac |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
10402330 |
aatgtttctggtacacgtccatgttgtaac |
10402359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 3e-74; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 85 - 494
Target Start/End: Original strand, 37501384 - 37501799
Alignment:
| Q |
85 |
tgcctcaatacatgaattgaaaccaaccataagtaccttatttgctgacacttgg-tgtggaaagataatttaaatggagaatacatgacaaaaagtgtg |
183 |
Q |
| |
|
||||||| |||| ||||||||||||||||||| | ||| |||| ||||||||||| ||||||| ||||||||||||||| |||||| |||||||||||| |
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| T |
37501384 |
tgcctcagtacaagaattgaaaccaaccataattccctgattttctgacacttgggtgtggaacgataatttaaatggaaaatacacaacaaaaagtgtg |
37501483 |
T |
|
| Q |
184 |
tatcgctggctcttatctcggagggatggtattgtctcactgaagaaatgaaattggatttggaagttactactttcgactagtgtggaattttttacct |
283 |
Q |
| |
|
|||| |||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| ||| |||||| |||||||| | | ||||| || |
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|
| T |
37501484 |
tatcattggctcttatcttggagggatgatattgtctcattgaagaaatgaaattggatttggaaattatcactttcagctagtgtgcagtcttttatct |
37501583 |
T |
|
| Q |
284 |
gacatgtttgtaataa--ctatttcaactaaatatgtcctacaccatcgagagatgaatgttt------ctggtacacgtccatgttgtaacagggaaga |
375 |
Q |
| |
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| | |||||| ||| ||||| |||||||||| ||| |||||||||||| | ||||||||| ||| |||| |||||||||||||| |||||| |
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| T |
37501584 |
ggctggtttgtcgtaactctattccaactaaataagtcttacaccatcgaggggtgaatgtttatctggctgctacatgtccatgttgtaacgaggaaga |
37501683 |
T |
|
| Q |
376 |
tgaatctattcttcattgcttcatccattgtccaagagtggttgcagtgttggtttggatgtggattctctaacgagtcttcattgtgcactaataatct |
475 |
Q |
| |
|
||||| ||||||||||||| ||||| ||||||| |||| ||||||| | |||| ||||||||| ||| | || | |||||||||||| || | ||||| |
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|
| T |
37501684 |
tgaatatattcttcattgccccatcctttgtccacgagttgttgcagcg-tggtctggatgtggcttccccaatgtgtcttcattgtg--ctgacaatct |
37501780 |
T |
|
| Q |
476 |
ctcgagttatatgagagat |
494 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
37501781 |
ctcgagtaatatgagagat |
37501799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 173 - 474
Target Start/End: Original strand, 33928341 - 33928642
Alignment:
| Q |
173 |
caaaaagtgtgtatcgctggctcttatctcggagggatggtattgtctcactgaagaaatgaaattggatttggaagttactactttcgactagtgtgga |
272 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||| |||||||||| | ||||||| |||||||||| |||||||| |||||| |||||||| | |
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|
| T |
33928341 |
caaaaagtgtgtatcactggctcttatcttggagggatgatattgtctcattagagaaatggaattggattttgaagttaccactttcagctagtgtgca |
33928440 |
T |
|
| Q |
273 |
attttttacctgacatgtttgtaataa--ctatttcaactaaatatgtcctacaccatcgagagatgaatgtttctggtacacgtccatgttgtaacagg |
370 |
Q |
| |
|
|||||||| || || ||||| | || ||||| | ||||| || |||| |||||||||| | |||| ||||||| |||| |||||||||| || | |
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|
| T |
33928441 |
attttttatttggcagatttgtcacaattctattccgtctaaacatatcctgcaccatcgaggggtgaaagtttctgctacatatccatgttgt-acgag |
33928539 |
T |
|
| Q |
371 |
gaagatgaatctattcttcattgcttcatccattgtccaagagtggttgcagtgttggtttggatgtggattctctaacgagtcttcattgtgcactaat |
470 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| ||||| ||| |||| | || |||| |||||||||||| | ||| ||||||||||||| ||||| |
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| T |
33928540 |
gaagatgaatctattcctcattgcctcatcctttgtctgcgagctgttgtaatg-tggtctggatgtggattaccctacgtgtcttcattgtgcgctaat |
33928638 |
T |
|
| Q |
471 |
aatc |
474 |
Q |
| |
|
|||| |
|
|
| T |
33928639 |
aatc |
33928642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 76 - 222
Target Start/End: Complemental strand, 9194165 - 9194018
Alignment:
| Q |
76 |
tgaaattgttgcctcaatacatgaattgaaaccaaccataagtaccttatttgctgacacttgg-tgtggaaagataatttaaatggagaatacatgaca |
174 |
Q |
| |
|
||||||||||||||| || || || | |||||||||||||| ||| ||| |||||||| ||||| |||||| ||| |||||||| | |||||||| ||| |
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|
| T |
9194165 |
tgaaattgttgcctcgatgcaggagtggaaaccaaccataattacattaattgctgacccttgggtgtggatagacaatttaaacgaagaatacacaaca |
9194066 |
T |
|
| Q |
175 |
aaaagtgtgtatcgctggctcttatctcggagggatggtattgtctca |
222 |
Q |
| |
|
||||||| |||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
9194065 |
aaaagtgcatatcaccggctcttatctcggagggatggtattgtctca |
9194018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 142 - 494
Target Start/End: Complemental strand, 32926175 - 32925822
Alignment:
| Q |
142 |
tggaaagataatttaaatggagaatacatgacaaaaagtgtgtatcgctggctcttatctcggagggatggtattgtctcactgaagaaatgaaattgga |
241 |
Q |
| |
|
|||||||| |||||||| |||||||||| ||||||||| | ||| ||||||||||||||||||||||| |||||||||| || ||||||| ||||||| |
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|
| T |
32926175 |
tggaaagacaatttaaacggagaatacacagcaaaaagtgcg-atcactggctcttatctcggagggatgatattgtctcattggagaaatggaattgga |
32926077 |
T |
|
| Q |
242 |
tttggaagttactactttcgactagtgtggaa-ttttttacctgacatgtttgtaataa--ctatttcaactaaatatgtcctacaccatcgagagatga |
338 |
Q |
| |
|
||||||| |||| ||||||| |||||||| || ||||||| || || || | | |||| ||||| |||||||||||||| ||||||| | | ||| |
|
|
| T |
32926076 |
tttggaaattaccactttcggctagtgtgcaatttttttatatggcaggtgtttcataattctattccaactaaatatgtctcgcaccatcaaagggtga |
32925977 |
T |
|
| Q |
339 |
atgtttctggtacacgtccatgttgtaacagggaagatgaatctattcttcattgcttcatccattgtccaagagtggttgcagtgttggtttggatgtg |
438 |
Q |
| |
|
|||||||| |||| ||||||| |||||| ||||||||||||||||||||||||| |||||| ||||| ||| |||| |||| |||| | ||||| |
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|
| T |
32925976 |
atgtttctactacatgtccatgatgtaacgaggaagatgaatctattcttcattgcctcatcctttgtctgcgagctgttgtagtg-tggtcttgatgta |
32925878 |
T |
|
| Q |
439 |
gattctctaacgagtcttcattgtgcactaataatctctcgagttatatgagagat |
494 |
Q |
| |
|
||||| |||| | |||||||||| || ||||||||| |||||| |||||| |||| |
|
|
| T |
32925877 |
gattccctaatgtgtcttcattgcgcgctaataatccttcgagtaatatgaaagat |
32925822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 32926223 - 32926180
Alignment:
| Q |
79 |
aattgttgcctcaatacatgaattgaaaccaaccataagtacct |
122 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
32926223 |
aattgttgcctcaatacaggagttgaaaccaaccataattacct |
32926180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 308 - 494
Target Start/End: Original strand, 32331325 - 32331510
Alignment:
| Q |
308 |
actaaatatgtcctacaccatcgagagatgaatgtttctggtacacgtccatgttgtaacagggaagatgaatctattcttcattgcttcatccattgtc |
407 |
Q |
| |
|
|||||||| ||||| |||||||||| | |||||||||||| || | ||||||||||||| || ||||||||||||||| ||||||| |||||| ||||| |
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|
| T |
32331325 |
actaaatacgtcctgcaccatcgaggggtgaatgtttctgctatatgtccatgttgtaatcggaaagatgaatctattcctcattgcctcatcctttgtc |
32331424 |
T |
|
| Q |
408 |
caagagtggttgcagtgttggtttggatgtggattctctaacgagtcttcattgtgcactaataatctctcgagttatatgagagat |
494 |
Q |
| |
|
| ||| ||||||||| |||| |||||||| |||| |||||| |||||| ||||||| |||||||| |||||| ||||||||||| |
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|
| T |
32331425 |
cgcgagctgttgcagtg-tggtctggatgtgaattccctaacgtgtcttctttgtgcattaataatccttcgagtaatatgagagat |
32331510 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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