View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18257_low_5 (Length: 426)

Name: NF18257_low_5
Description: NF18257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18257_low_5
NF18257_low_5
[»] chr4 (2 HSPs)
chr4 (10-426)||(10406283-10406711)
chr4 (216-345)||(43859954-43860083)
[»] chr5 (2 HSPs)
chr5 (135-379)||(3548883-3549129)
chr5 (16-104)||(3549171-3549259)
[»] chr1 (4 HSPs)
chr1 (135-408)||(33928821-33929100)
chr1 (135-424)||(37501942-37502233)
chr1 (16-263)||(12975589-12975848)
chr1 (135-213)||(7504460-7504538)
[»] chr3 (4 HSPs)
chr3 (241-408)||(34545760-34545928)
chr3 (263-396)||(32925537-32925670)
chr3 (221-309)||(28681870-28681959)
chr3 (16-116)||(20497444-20497544)
[»] chr7 (1 HSPs)
chr7 (223-308)||(18702884-18702970)
[»] chr8 (4 HSPs)
chr8 (231-394)||(43190156-43190320)
chr8 (335-379)||(42347014-42347058)
chr8 (263-304)||(32331704-32331745)
chr8 (135-207)||(32331762-32331834)
[»] chr2 (1 HSPs)
chr2 (296-394)||(36284372-36284473)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 10 - 426
Target Start/End: Complemental strand, 10406711 - 10406283
Alignment:
Q  10 tcgaagaatatgataaatggaaataccacactccttatccaaatacgtatgaatgagttccaacaggattgcatattaatgaagtttcaacactttcttt 109  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||| |||||||||||    
T  10406711 tcgaaaaatatgataaatggaaataccacactccttatccaaatacatatgaatgagttccaagaggattgcatattgatgaagtttcgacactttcttt 10406612  T
Q  110 gacacta-----------tgaagagagtcnnnnnnncaaaccagtttcttataaccaacctctcatcaaagtttaatttcaatcataaatacatgaattt 198  Q
    |||||||           |||||||||||       ||||||||||||||||||||||||||||| |||||||||||  ||||||||||  |||||||||    
T  10406611 gacactaaatgcactacatgaagagagtcagaaaaacaaaccagtttcttataaccaacctctcagcaaagtttaatcccaatcataaaggcatgaattt 10406512  T
Q  199 atgcatgcaaaata-tgtacaaccccacactgccatataagaaaaattgaaagtttcactcaaaatcctaaccaatccaccttatcttgctttacctggg 297  Q
    |||||||||||||| ||| |||||  ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  10406511 atgcatgcaaaatactgttcaacctgacactgccatagaaggaaaattgaaagtttcactcaaaatcctaaccaatccaccatatcttgctttatctggg 10406412  T
Q  298 ttagttaaagcattgtcatctatattaagagtcattgtatcattatcaccatgctgccagcatacttcatgaatggacctaattaatgcggttgaaatag 397  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10406411 ttagttaaagcattgtcatctacattaagagtcattgtatcattatcaccatgctgccagcatacttcatgaatggacctaattaatgcggttgaaatag 10406312  T
Q  398 tattctcgaatattcgttgtgaaacttac 426  Q
    |||||||||||||||||||||||||||||    
T  10406311 tattctcgaatattcgttgtgaaacttac 10406283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 345
Target Start/End: Original strand, 43859954 - 43860083
Alignment:
Q  216 acaaccccacactgccatataagaaaaattgaaagtttcactcaaaat-cctaaccaatccaccttatcttgctttacctgggttagttaaagcattgtc 314  Q
    |||| |||||||| ||| |||||| |||||||||||| |  ||||||| ||||| ||||||||| ||  ||||||| || ||||||||||||||  || |    
T  43859954 acaaacccacactaccacataagacaaattgaaagttgccttcaaaattcctaatcaatccaccatagtttgctttccc-gggttagttaaagcgctgcc 43860052  T
Q  315 atctatattaagagtcattgtatcattatca 345  Q
    ||||| ||||| |  ||||||||||||||||    
T  43860053 atctacattaaaaaccattgtatcattatca 43860083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 135 - 379
Target Start/End: Complemental strand, 3549129 - 3548883
Alignment:
Q  135 caaaccagtttcttataaccaacctctcatcaaagtttaatttcaatcataaatacatgaatttatgcatgcaaaatat-gtacaaccccacactgccat 233  Q
    ||||| ||||||||||||| | |||| || ||||| |||||  |||||||||  |||||||||| |||||||||||||| | |||| |  ||||| ||||    
T  3549129 caaactagtttcttataacgagcctcccagcaaagcttaatcccaatcataagaacatgaatttctgcatgcaaaatattggacaatcaaacactaccat 3549030  T
Q  234 ataagaaaaattgaaagtttcactcaaaat-cctaaccaatccaccttatcttgctttacctgggttagttaaagcattgtcatctatattaagagtcat 332  Q
    | |||  ||||||||| |||| |||||||| ||||||||||||||| ||||||||||||||| ||||||||||| | ||| |||||| |||||||  |||    
T  3549029 agaaggcaaattgaaattttccctcaaaattcctaaccaatccaccatatcttgctttacctaggttagttaaaacgttgccatctacattaagaaccat 3548930  T
Q  333 tgtatcattatcaccatgctgccagcatacttcatgaatggacctaa 379  Q
    |||| ||||||  ||||| ||||| |||||||||||| ||| |||||    
T  3548929 tgtaccattatttccatgttgccaacatacttcatgagtgggcctaa 3548883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 3549259 - 3549171
Alignment:
Q  16 aatatgataaatggaaataccacactccttatccaaatacgtatgaatgagttccaacaggattgcatattaatgaagtttcaacactt 104  Q
    |||||||| |||||||||| | |||| |||||||||||||||  ||||| |||| || ||| | ||||| | ||||||| || ||||||    
T  3549259 aatatgatgaatggaaatatcccacttcttatccaaatacgtccgaatgtgttctaagaggttcgcatagtgatgaagtctcgacactt 3549171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 135 - 408
Target Start/End: Complemental strand, 33929100 - 33928821
Alignment:
Q  135 caaaccagtttcttataaccaacctctcatcaaagtttaatttcaatcataaatacatgaatttatgcatgcaaaatat-gtacaaccccacactgccat 233  Q
    ||||| ||||| ||||||||| | || || ||||| |||||  |||||||||   | ||||||| |||||||| ||||| | ||||||||| ||| ||||    
T  33929100 caaactagttttttataaccagcttcccaacaaagcttaatcccaatcataagggcttgaatttctgcatgcagaatattggacaaccccaaactaccat 33929001  T
Q  234 ataagaaaaattgaaagtttcactcaaaat-cctaaccaat----ccaccttatcttgctttacctgggttagttaaagcattgtcatctatattaagag 328  Q
    | |||  ||||||||| |||  |||||||| |||||| |||    ||||| |||| ||||||||||||||||||||||||  || |||| | |||||||     
T  33929000 agaaggcaaattgaaaattttcctcaaaattcctaactaatatatccaccatatcctgctttacctgggttagttaaagcgctgccatccacattaagaa 33928901  T
Q  329 tcattgtatcattatcaccatgctgccagcatacttcatgaatggacctaattaatgcggttgaaatagtattctcgaat 408  Q
     ||||||||||||||||||||| ||||| |||||||||||| ||| ||||| ||||||||||||||||||||| ||||||    
T  33928900 ccattgtatcattatcaccatgttgccaacatacttcatgagtgggcctaactaatgcggttgaaatagtattgtcgaat 33928821  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 135 - 424
Target Start/End: Complemental strand, 37502233 - 37501942
Alignment:
Q  135 caaaccagtttcttataaccaacctctcatcaaagtttaatttcaatcataaatacatgaatttatgcatgcaaaatat-gtacaaccccacactgccat 233  Q
    ||||||| |||||||||| || |||| |||||||| ||||| ||||||||||   |||||||||   |||||||||||| |  ||||||| |||| ||||    
T  37502233 caaaccaatttcttataatcagcctcccatcaaagcttaatctcaatcataagggcatgaatttcaacatgcaaaatattgggcaaccccgcactaccat 37502134  T
Q  234 ataagaaaaattgaaagtttcactcaaaatc-ctaaccaatccaccttatcttgctttacctgggttagttaaagcattgtcatctatattaagagtcat 332  Q
    | ||   ||||||||| ||||  |||||||  ||||| |||||||  |||| | |||||| ||||||||| ||||  |||||||||| |||||||  |||    
T  37502133 aaaatgcaaattgaaattttccttcaaaatttctaacgaatccactatatcctactttacttgggttagtcaaagtgttgtcatctacattaagaaccat 37502034  T
Q  333 tgtatcattatcaccatgctgccagcatacttcatgaatggacctaattaatgcggttgaaatagtattctcgaatattcgttgtgaaactt 424  Q
    |||||||||||||||||||| | | |||||||||||| ||| ||||| |||||||||| ||||| |||| | ||||   |||||||||||||    
T  37502033 tgtatcattatcaccatgctactaacatacttcatgagtgggcctaactaatgcggttaaaataatattgttgaatgcccgttgtgaaactt 37501942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 263
Target Start/End: Original strand, 12975589 - 12975848
Alignment:
Q  16 aatatgataaatggaaataccacactccttatccaaatacgtatgaatgagttccaacaggattgcatattaatgaagtttcaacactttctttgacact 115  Q
    |||||||| |||||||||| | ||||||||| |||||||| | ||||| || ||||| ||  ||||||| | ||||||  |||| ||||||||||| |||    
T  12975589 aatatgatgaatggaaatatcccactccttaaccaaatacatctgaataagctccaaaagatttgcatagtgatgaagcctcaatactttctttgaaact 12975688  T
Q  116 a-----------tgaagagagtcnnnnnnncaaaccagtttcttataaccaacctctcatcaaagtttaatttcaatcataaatacatgaatttatgcat 204  Q
    |           |||||||||||       ||||| ||||||||||||||| | || || ||||| |||||  |||||||||   ||||||||| |||||    
T  12975689 aattgcactacatgaagagagtcagaaaaacaaactagtttcttataaccagcttcccaacaaagcttaatcccaatcataagggcatgaatttctgcat 12975788  T
Q  205 gcaaaata-tgtacaaccccacactgccatataagaaaaattgaaagtttcactcaaaat 263  Q
    ||| |||| || ||||| ||||||| ||||| ||   ||||||||| |||  ||||||||    
T  12975789 gcagaatattggacaactccacactaccatagaaagcaaattgaaatttttcctcaaaat 12975848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 7504538 - 7504460
Alignment:
Q  135 caaaccagtttcttataaccaacctctcatcaaagtttaatttcaatcataaatacatgaatttatgcatgcaaaatat 213  Q
    ||||||| ||||||||||| | |||| |||||||| |||||  |||||||||   ||||||||| |||| |||||||||    
T  7504538 caaaccaatttcttataactagcctcccatcaaagcttaatcccaatcataagggcatgaatttttgcacgcaaaatat 7504460  T

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Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 241 - 408
Target Start/End: Original strand, 34545760 - 34545928
Alignment:
Q  241 aaattgaaagtttcactcaaaat-cctaaccaatccaccttatcttgctttacctgggttagttaaagcattgtcatctatattaagagtcattgtatca 339  Q
    |||||| || |||| |||||||| ||||||||||||||| |||| || ||||||| |||||||||||||  |  ||||||  || | |  || || ||||    
T  34545760 aaattgcaattttccctcaaaattcctaaccaatccaccatatcatgttttacctaggttagttaaagcgctaccatctacgttgaaaaccagtgaatca 34545859  T
Q  340 ttatcaccatgctgccagcatacttcatgaatggacctaattaatgcggttgaaatagtattctcgaat 408  Q
    ||||||||||| |||| | ||||||||||| ||| ||||| || ||||||||||||| |||| ||||||    
T  34545860 ttatcaccatgttgccggtatacttcatgagtgggcctaactagtgcggttgaaataatattgtcgaat 34545928  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 263 - 396
Target Start/End: Original strand, 32925537 - 32925670
Alignment:
Q  263 tcctaaccaatccaccttatcttgctttacctgggttagttaaagcattgtcatctatattaagagtcattgtatcattatcaccatgctgccagcatac 362  Q
    |||||||||||||||| |||||| |||||  |||||||||||||||     |||| | |||||||  |||||||||||||||| ||   ||||| ||| |    
T  32925537 tcctaaccaatccaccgtatcttactttatttgggttagttaaagcgcaaccatccacattaagaaccattgtatcattatcatcactttgccaacatgc 32925636  T
Q  363 ttcatgaatggacctaattaatgcggttgaaata 396  Q
    ||||||| ||| ||||| ||||||||||||||||    
T  32925637 ttcatgagtgggcctaactaatgcggttgaaata 32925670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 309
Target Start/End: Complemental strand, 28681959 - 28681870
Alignment:
Q  221 cccacactgccatataagaaaaattgaaagtttcactcaaaat-cctaaccaatccaccttatcttgctttacctgggttagttaaagca 309  Q
    |||||||| ||||| |||  ||||||||| || |  ||||||| ||||| ||||||| | || |||| ||||||||||||||||||||||    
T  28681959 cccacactaccatacaaggcaaattgaaaattgccatcaaaattcctaatcaatccatcatagcttgttttacctgggttagttaaagca 28681870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 20497544 - 20497444
Alignment:
Q  16 aatatgataaatggaaataccacactccttatccaaatacgtatgaatgagttccaacaggattgcatattaatgaagtttcaacactttctttgacact 115  Q
    |||||| | ||||||||||   |||||||||||||||||| |  ||||||| ||||| ||| ||||||  | ||||| | || |||||| ||||||||||    
T  20497544 aatatggtgaatggaaataaatcactccttatccaaatacatccgaatgagctccaagaggtttgcatggtgatgaaatctcgacacttcctttgacact 20497445  T
Q  116 a 116  Q
    |    
T  20497444 a 20497444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 308
Target Start/End: Original strand, 18702884 - 18702970
Alignment:
Q  223 cacactgccatataagaaaaattgaaagtttcactcaaaatcc-taaccaatccaccttatcttgctttacctgggttagttaaagc 308  Q
    |||||| ||||| |||| ||||||||| ||||  ||||||| | ||||||||||||| ||||||||||||||||| |||||||||||    
T  18702884 cacactaccatagaagataaattgaaattttccttcaaaattcataaccaatccaccatatcttgctttacctggattagttaaagc 18702970  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 394
Target Start/End: Complemental strand, 43190320 - 43190156
Alignment:
Q  231 catataagaaaaattgaaagtttcactcaaaat-cctaaccaatccaccttatcttgctttacctgggttagttaaagcattgtcatctatattaagagt 329  Q
    ||||||||  |||||||||||||  |||||||| ||||||||||||||| || | | |||||||| ||||| |||||| |||||| || | |||||||      
T  43190320 catataaggcaaattgaaagtttacctcaaaattcctaaccaatccaccataacatactttacctaggttacttaaagtattgtcgtccacattaagaac 43190221  T
Q  330 cattgtatcattatcaccatgctgccagcatacttcatgaatggacctaattaatgcggttgaaa 394  Q
     | || |||||||||||  || ||||| ||| |||||||| |||  |||| ||| |||| |||||    
T  43190220 aagtgcatcattatcactgtgttgccaacatgcttcatgagtgggtctaactaaagcggctgaaa 43190156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 379
Target Start/End: Original strand, 42347014 - 42347058
Alignment:
Q  335 tatcattatcaccatgctgccagcatacttcatgaatggacctaa 379  Q
    |||||||||||||||||||||| |||||||||||| ||| |||||    
T  42347014 tatcattatcaccatgctgccaacatacttcatgagtgggcctaa 42347058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 32331745 - 32331704
Alignment:
Q  263 tcctaaccaatccaccttatcttgctttacctgggttagtta 304  Q
    ||||||| |||||||| |||| ||||||||||||||||||||    
T  32331745 tcctaactaatccaccatatcgtgctttacctgggttagtta 32331704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 32331834 - 32331762
Alignment:
Q  135 caaaccagtttcttataaccaacctctcatcaaagtttaatttcaatcataaatacatgaatttatgcatgca 207  Q
    ||||||||||||||||||||| | || || ||||| |||||  |||||||||   ||||||||| ||||||||    
T  32331834 caaaccagtttcttataaccagcttcccagcaaagcttaatcccaatcataagggcatgaatttctgcatgca 32331762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 394
Target Start/End: Complemental strand, 36284473 - 36284372
Alignment:
Q  296 ggttagttaaagcattgtcatctatattaagagtcattgtatcatt---atcaccatgctgccagcatacttcatgaatggacctaattaatgcggttga 392  Q
    |||||||||||||  |  |||| |||||||||  |||| |||||||   ||||||||| ||||| ||||||||| || ||||||||| ||| ||||||||    
T  36284473 ggttagttaaagcgctaacatccatattaagaaccattatatcattatcatcaccatgttgccaacatacttcacgagtggacctaactaaagcggttga 36284374  T
Q  393 aa 394  Q
    ||    
T  36284373 aa 36284372  T

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