View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18257_low_6 (Length: 400)
Name: NF18257_low_6
Description: NF18257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18257_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 231 - 383
Target Start/End: Complemental strand, 39976435 - 39976283
Alignment:
| Q |
231 |
tagtacacatgttttaattaagttgatatgttatgtctaattccacctctccatgattatgacaggaagcttatgtggtaaacaatgaagaaaacaagaa |
330 |
Q |
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| T |
39976435 |
tagtacacatgttttaattaagttgatatgttatgtctaattccacctctccatgattatgacaggaagcttatgtggtaaacaatgaagaaaacaagaa |
39976336 |
T |
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| Q |
331 |
tagtccaaattcaatcatgccaagggacaaatatccaaagccattaatatttc |
383 |
Q |
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| T |
39976335 |
tagtccaaattcaatcatgccaagggacaaatatccaaagccattaatatttc |
39976283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 39976729 - 39976516
Alignment:
| Q |
9 |
acatcatcatcttttcatttccacttgcaaggtaagttttaaacaannnnnnnnnaaagggttggcaaattaaagatatctataaaacatttttgtgtat |
108 |
Q |
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| T |
39976729 |
acatcatcatcttttcatatccacttgcaaggtaagttttaaacaatttttttttaaagggttggcaaa-----gatatctataaaacttttttgtgtat |
39976635 |
T |
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| Q |
109 |
tttctgatgtacattattatttttctaactactgggtctaacgcaagtagttgatgcataaaatgtgtgggtgatgtaaacttattgagttcgatttcaa |
208 |
Q |
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| T |
39976634 |
tttctgatgtacattattattttt-taactaccgggtctaacgcaagtagttgatgcataaaatgtgtgggtgatgtaaacttattgagttcgatttcaa |
39976536 |
T |
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| Q |
209 |
tgaacgaaaaaacattatta |
228 |
Q |
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| T |
39976535 |
tgaacgaaaaaacattatta |
39976516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 383
Target Start/End: Original strand, 28538296 - 28538392
Alignment:
| Q |
283 |
atgattatgacaggaagcttatgtggtaaacaatgaagaaaacaagaatagtccaaattcaatcatgccaagggacaaatatccaaagccattaatattt |
382 |
Q |
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| T |
28538296 |
atgattatgacaggaagcttatgtgatgaacaatgaagga---aaaaatagtcaaaactcagtgatgccaa-ggagaaatatccaaagccattagtattt |
28538391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 383
Target Start/End: Complemental strand, 16148123 - 16148073
Alignment:
| Q |
333 |
gtccaaattcaatcatgccaagggacaaatatccaaagccattaatatttc |
383 |
Q |
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| T |
16148123 |
gtccaagttcaatcatgccaaaggaaaagtatccaaagccattaatatttc |
16148073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 383
Target Start/End: Original strand, 16194826 - 16194868
Alignment:
| Q |
341 |
tcaatcatgccaagggacaaatatccaaagccattaatatttc |
383 |
Q |
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| T |
16194826 |
tcaattatgccaagggaaaagtatccaaagccattaatatttc |
16194868 |
T |
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