View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18257_low_8 (Length: 323)
Name: NF18257_low_8
Description: NF18257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18257_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 50268080 - 50267809
Alignment:
| Q |
18 |
gctatatttgggggactaataataagaaattttaatttagtcataattctgttgttaaatatgtcttacgggacaacctttgattttcgttttt-ccccc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
50268080 |
gctatatttgggggactaataataagaaattttaatttagtcatgattctgttgttaaatatgtcttacgggacaccctttgattttcgttttttccccc |
50267981 |
T |
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| Q |
117 |
tattgattgttcctctttagtttagtttgagattgtaagttgtaattgttgtttttggccttaaaattttctaattgggttgtagcaagatcaaataaac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
50267980 |
tattgattgttcctctttagtttagtttgagattgtaagttgtaattgttgtttttggccttagaattttctaattgggttgtagcaagatcaaataaac |
50267881 |
T |
|
| Q |
217 |
aactttagatctcataaaaaatgaaacaaaatgttacggtcaactttagagctcccttaaggagttttattc |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
50267880 |
aactttagatctcataaaaaatgaaacaaaatgttacggtcaactttagagctcccttgaggagttttattc |
50267809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 24 - 288
Target Start/End: Complemental strand, 48685874 - 48685615
Alignment:
| Q |
24 |
tttgggggactaataataagaaattttaatttagtcataattctgttgttaaatatgtcttacgggacaacctttgattttcgtttttccccctattgat |
123 |
Q |
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||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| || ||||| |
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| T |
48685874 |
tttgggggaataataataagaaattttaatttagtcatgattctgttgttaaatatgtcttacgggacaacctttgatttttgttttttttcccgttgat |
48685775 |
T |
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| Q |
124 |
tgttcctctttagtttagtttgagattgtaagttgtaattgttgttttt-ggccttaaaattttctaattgggttgtagcaagatcaaataaacaacttt |
222 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48685774 |
tgtt-------agtttagtttgagattgtaagttgtaattgttgttttttggccttggaattttctacttgggttgtagcaagatcaaataaacaacttt |
48685682 |
T |
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| Q |
223 |
agatctcataa-aaaatgaaacaaaatgttacggtcaactttagagctcccttaaggagttttattc |
288 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
48685681 |
agatctcataaaaaaatgaaacaaaatgttacggtcaactttagagctctcttgaggagttttattc |
48685615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 141 - 288
Target Start/End: Complemental strand, 37688763 - 37688616
Alignment:
| Q |
141 |
gtttgagattgtaagttgtaattgttgtttttggccttaaaattttctaattgggttgtagcaagatcaaataaacaactttagatctcataa-aaaatg |
239 |
Q |
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|||||||||||||||||||||||||||| || |||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
37688763 |
gtttgagattgtaagttgtaattgttgtatt-ggccttggaattttttaattgggttgtagcaagatcaaataaacaactttaaatctcataaaaaaatg |
37688665 |
T |
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| Q |
240 |
aaacaaaatgttacggtcaactttagagctcccttaaggagttttattc |
288 |
Q |
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||||||||||||| ||||||||||||||||| ||| ||||||||||||| |
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| T |
37688664 |
aaacaaaatgttatggtcaactttagagctctcttgaggagttttattc |
37688616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 37688858 - 37688771
Alignment:
| Q |
24 |
tttgggggactaataataagaaattttaatttagtcataattctgttgttaaatatgtcttacgggacaacctttgattttcgttttt |
111 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| |||||| |
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| T |
37688858 |
tttgggagactaataataagaaattttaatttagtcatgattctgttgttaaatatgtcttacaggacatcctttgatttttgttttt |
37688771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 7987835 - 7987779
Alignment:
| Q |
117 |
tattgattgttcctctttagtttagtttgagattgtaagttgtaattgttgtttttg |
173 |
Q |
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|||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7987835 |
tattgagtattcctctttagtttagtttgagattgtaatttgtaattgttgtttttg |
7987779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 32870761 - 32870816
Alignment:
| Q |
117 |
tattgattgttcctctttagtttagtttgagattgtaagttgtaattgttgttttt |
172 |
Q |
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|||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32870761 |
tattgagtattcctctttagtttagtttgagattgtaatttgtaattgttgttttt |
32870816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 44993347 - 44993288
Alignment:
| Q |
119 |
ttgattgttcctctttagtttagtttgagattgtaagttgtaattgttgtttttggcctt |
178 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
44993347 |
ttgattattcctctatagtttagtttgagattgtaattagtaattgttgtttttggcctt |
44993288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 28886674 - 28886769
Alignment:
| Q |
117 |
tattgattgttcctctttagtttagtttgagattgtaagttgtaattgttgtttttggccttaaaattttctaattgggttgtagcaagatcaaat |
212 |
Q |
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|||||| | ||||||| ||||||||| ||||||||||| || | |||| |||||||||| || ||||||||| ||| |||| |||| |||||||| |
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| T |
28886674 |
tattgagtattcctctctagtttagtgtgagattgtaatttttcattgctgtttttggcattggaattttctatttgtgttgcagcaggatcaaat |
28886769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 30901767 - 30901708
Alignment:
| Q |
119 |
ttgattgttcctctttagtttagtttgagattgtaagttgtaattgttgtttttggcctt |
178 |
Q |
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|||||| ||||||| ||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
30901767 |
ttgattattcctctatagtttagtttgagattgtaattagtaattgttgtttttggcctt |
30901708 |
T |
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