View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18258_high_1 (Length: 501)
Name: NF18258_high_1
Description: NF18258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18258_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 365873 - 366216
Alignment:
| Q |
1 |
tttgagaaagtgagagtatggaaaatgtctatgagagctgtttgagatttggcgccattgttgatgagactgtggacatttgaggttatggttttgaatt |
100 |
Q |
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| T |
365873 |
tttgagaaagtgagagtatggaaaatgtctatgagagctgtttgagattcggcgtcattgttgatgagactgtggacatttgaggttatggttttgaatt |
365972 |
T |
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| Q |
101 |
tgttgacgaaatggaagtcgtcggaagaaattaggaggctaatgagattagggtgtttttggaagggacgagtggtggatgatgatggttataggaaaga |
200 |
Q |
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| T |
365973 |
tgttgacgaaatggaaatcgtcagaagaaattaggaggctaatgagattagggtgtttttggaagggacgagtggtggatgatgatggttataggaaaga |
366072 |
T |
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| Q |
201 |
gaggttgtaatagaacgatgaaggtgttgtatgtaatgagagacatgtatgtaatataatgaggttgaggggaagaattggtttgtaagaatgagaagaa |
300 |
Q |
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| T |
366073 |
gaggttgtaatagaacgatgaaggtgttgtatgtaatgagagacatgcatgtaatgtaatgaggttgaggggaagaattggtttgtaagaatgagaagaa |
366172 |
T |
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| Q |
301 |
tttgaagtcttactgaggagtggtgttgatgatgttgcttcttc |
344 |
Q |
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| T |
366173 |
tttgaagtcttactgaggagtggtgttgatgatgttgcttcttc |
366216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 412 - 492
Target Start/End: Original strand, 366284 - 366364
Alignment:
| Q |
412 |
cggtatgattcttagatctatttagaattcatttgtgttcttttctagaggaaggatcgatttcaatgttgttgttgtgtt |
492 |
Q |
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| T |
366284 |
cggtatgattcttagatctatttagaattcatttgtgttcttttctggaggaaggattgatttcaatgttgttgttgtgtt |
366364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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