View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18258_high_11 (Length: 292)
Name: NF18258_high_11
Description: NF18258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18258_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 48877214 - 48876955
Alignment:
| Q |
1 |
actccacttgaattgtccgaatttttctgaggtagaagaaataaggactgaactggtttgaataagcttcaaatagtgtagccaaacttctctgcttggt |
100 |
Q |
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| T |
48877214 |
actccacttgaattgtccgaatttttctgaggtagaagaaataaggactgaactggtttgaataagcttcaaatagtggagccaaacttctctgcttggt |
48877115 |
T |
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| Q |
101 |
catgcaggttgtagtgaagatagttgcaaagtaacaaattaagaagggtttactgacagaactcggcatggagcaggcactgtggcaatccggtgcattg |
200 |
Q |
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| T |
48877114 |
catacaggttgtagtgaagatagttgcaaagtaacaaattaagaagggtttactgacagaactcgtcatggagcaggcactgtggcaatccggtgcattg |
48877015 |
T |
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| Q |
201 |
caaagaggttgctctgaacttcagcgagatggccagtaagttcatggctatacgaataga |
260 |
Q |
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| T |
48877014 |
caaagaggttgctctgaacttcagcgagatcgccagtaagttcatggctatacgaataga |
48876955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 151
Target Start/End: Original strand, 8380942 - 8381008
Alignment:
| Q |
85 |
aacttctctgcttggtcatgcaggttgtagtgaagatagttgcaaagtaacaaattaagaagggttt |
151 |
Q |
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| T |
8380942 |
aacttctctgcctgatcatataggttgtagtggaggtagttacgaagtaacaaattaagaagtgttt |
8381008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 53456409 - 53456480
Alignment:
| Q |
85 |
aacttctctgcttggtcatgcaggttgtagtgaagatagttgcaaagtaacaaattaagaagggtttactga |
156 |
Q |
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| T |
53456409 |
aacttctctgcctggtcatataggttgtagtgaagatagttgcgaagcagcaaattaagaagggtttcctga |
53456480 |
T |
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