View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18258_high_12 (Length: 288)

Name: NF18258_high_12
Description: NF18258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18258_high_12
NF18258_high_12
[»] scaffold0649 (1 HSPs)
scaffold0649 (18-288)||(4564-4834)
[»] chr2 (5 HSPs)
chr2 (39-186)||(20974711-20974858)
chr2 (70-188)||(20700214-20700332)
chr2 (39-175)||(20979746-20979885)
chr2 (39-175)||(20966934-20967073)
chr2 (59-188)||(20713283-20713412)
[»] chr7 (3 HSPs)
chr7 (102-188)||(24009569-24009655)
chr7 (100-188)||(24001383-24001471)
chr7 (102-156)||(24034934-24034988)
[»] chr6 (2 HSPs)
chr6 (42-192)||(19747485-19747635)
chr6 (111-184)||(33568077-33568150)
[»] chr3 (2 HSPs)
chr3 (100-184)||(36339299-36339383)
chr3 (108-189)||(53414948-53415029)
[»] chr4 (2 HSPs)
chr4 (77-163)||(53773977-53774063)
chr4 (100-142)||(23839889-23839931)
[»] scaffold0707 (1 HSPs)
scaffold0707 (111-184)||(4471-4544)
[»] scaffold0097 (1 HSPs)
scaffold0097 (59-188)||(17122-17251)
[»] chr8 (1 HSPs)
chr8 (100-156)||(11345970-11346026)


Alignment Details
Target: scaffold0649 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 4564 - 4834
Alignment:
Q  18 gtgactatccttccatctattctccccgacgacctcgtcgccgaaatcctatccttccttgacgtgaaatctcttacgaaactcaaatgtgtgagcaaat 117  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4564 gtgactatccttccatctattctcccccacgacctcgtcgccgaaatcctatccttccttgacgtgaaatctcttacgaaactcaaatgtgtgagcaaat 4663  T
Q  118 catggaactcactcatctccgatcccatcttcgtccaaatgcacctcaagaaatcatcacaaaacccacacatcaccctgtgttcgtctaatgacggcta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  4664 catggaactcactcatctccgatcccatcttcgtccaaatgcacctcaagaaatcatcacaaaacccacacatcacactgtgttcgtctaatgacggctt 4763  T
Q  218 tttcacactccatcctttcccaatacgtagtttactcgagaatcggtttatggatcatcctgatcactacc 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4764 tttcacactccatcctttcccaatacgtagtttactcgagaatcggtttatggatcatcctgatcactacc 4834  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 20974711 - 20974858
Alignment:
Q  39 ctccccgacgacctcgtcgccgaaatcctatccttccttgacgtgaaatctcttacgaaactcaaatgtgtgagcaaatcatggaactcactcatctccg 138  Q
    ||||| ||||| |||||||||||| ||||||||||||||  ||| || ||||| | | ||||||| ||||||||||||||||||||||| || ||||| |    
T  20974711 ctccctgacgaactcgtcgccgaagtcctatccttccttcccgttaattctctcatgcaactcaagtgtgtgagcaaatcatggaactcgcttatctctg 20974810  T
Q  139 atcccatcttcgtccaaatgcacctcaagaaatcatcacaaaacccac 186  Q
    ||||| | |||||| || |||||||||  ||||| |||  ||||||||    
T  20974811 atccctttttcgtcaaattgcacctcatcaaatcttcaagaaacccac 20974858  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 70 - 188
Target Start/End: Complemental strand, 20700332 - 20700214
Alignment:
Q  70 ccttccttgacgtgaaatctcttacgaaactcaaatgtgtgagcaaatcatggaactcactcatctccgatcccatcttcgtccaaatgcacctcaagaa 169  Q
    |||| |||||||||||||| |||||  | |||||||||||||||||||||||| |||| ||||||||||||||  | |||||| || |||| ||| | ||    
T  20700332 cctttcttgacgtgaaatcacttacacagctcaaatgtgtgagcaaatcatggtactcgctcatctccgatccttttttcgtcaaattgcatctcgataa 20700233  T
Q  170 atcatcacaaaacccacac 188  Q
    ||| || ||||| ||||||    
T  20700232 atcttcgcaaaaaccacac 20700214  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 175
Target Start/End: Original strand, 20979746 - 20979885
Alignment:
Q  39 ctccccgacgacctcgtcgccgaaatcctatccttccttgacgtgaaatctcttacgaaactcaaatgtgtgagcaaatcatggaactcactcatctcc- 137  Q
    ||||||||||| ||| |||| ||| ||||||| || |||||| | |||| ||| | | |||||||||||||  ||||||||||||| ||||||||||||     
T  20979746 ctccccgacgatctcatcgctgaagtcctatcatttcttgacataaaatttctgatgcaactcaaatgtgtttgcaaatcatggaattcactcatctcct 20979845  T
Q  138 --gatcccatcttcgtccaaatgcacctcaagaaatcatc 175  Q
      ||||||| ||||| | ||||||||||||  ||||||||    
T  20979846 ctgatcccaccttcgccaaaatgcacctcattaaatcatc 20979885  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 39 - 175
Target Start/End: Original strand, 20966934 - 20967073
Alignment:
Q  39 ctccccgacgacctcgtcgccgaaatcctatccttccttgacgtgaaatctcttacgaaactcaaatgtgtgagcaaatcatggaactcactcatctcc- 137  Q
    ||||| ||||| ||| |||| ||| ||||||| || |||||| | |||| ||| | | |||||||||||||  ||||||||||||| ||||||||||||     
T  20966934 ctcccggacgatctcatcgctgaagtcctatcattgcttgacataaaatttctgatgcaactcaaatgtgtttgcaaatcatggaattcactcatctcct 20967033  T
Q  138 --gatcccatcttcgtccaaatgcacctcaagaaatcatc 175  Q
      ||||||| ||||| | ||||||||||||  ||||||||    
T  20967034 ctgatcccaccttcgccaaaatgcacctcattaaatcatc 20967073  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 20713412 - 20713283
Alignment:
Q  59 cgaaatcctatccttccttgacgtgaaatctcttacgaaactcaaatgtgtgagcaaatcatggaactcactcatctccgatcccatcttcgtccaaatg 158  Q
    ||||||||||||||| ||| | |||||| | ||||  |   |||| ||||||||||| |||||| |||| ||||||||| ||||| ||||| || |||      
T  20713412 cgaaatcctatccttgcttaaagtgaaaccacttattaggttcaagtgtgtgagcaagtcatggtactctctcatctccaatcccttcttcatcaaaaaa 20713313  T
Q  159 cacctcaagaaatcatcacaaaacccacac 188  Q
    ||||||   ||||| |||||||||||||||    
T  20713312 cacctctttaaatcttcacaaaacccacac 20713283  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 188
Target Start/End: Original strand, 24009569 - 24009655
Alignment:
Q  102 aaatgtgtgagcaaatcatggaactcactcatctccgatcccatcttcgtccaaatgcacctcaagaaatcatcacaaaacccacac 188  Q
    |||||| ||||||| ||||||||| |  ||||||||||||| | ||| ||||||||||| || ||||| ||||||||||||||||||    
T  24009569 aaatgtttgagcaagtcatggaacactttcatctccgatccaaactttgtccaaatgcatcttaagaagtcatcacaaaacccacac 24009655  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 24001383 - 24001471
Alignment:
Q  100 tcaaatgtgtgagcaaatcatggaactcactcatctccgatcccatcttcgtccaaatgcacctcaagaaatcatcacaaaacccacac 188  Q
    |||||||| ||||||| ||||||||| |  ||||||||||||| | ||| ||||||||||| || ||||| |||||||| ||| |||||    
T  24001383 tcaaatgtctgagcaagtcatggaacactttcatctccgatccaacctttgtccaaatgcatcttaagaagtcatcacagaactcacac 24001471  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 24034934 - 24034988
Alignment:
Q  102 aaatgtgtgagcaaatcatggaactcactcatctccgatcccatcttcgtccaaa 156  Q
    ||||| |||||||| ||||||||| | ||||||||||||||  ||||||||||||    
T  24034934 aaatgcgtgagcaagtcatggaacgctctcatctccgatccactcttcgtccaaa 24034988  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 192
Target Start/End: Complemental strand, 19747635 - 19747485
Alignment:
Q  42 cccgacgacctcgtcgccgaaatcctatccttccttgacgtgaaatctcttacgaaactcaaatgtgtgagcaaatcatggaactcactcatctccgatc 141  Q
    |||||||| ||  |||| |||||||||||||| ||| |||||||| |  | | | || | |||||||||||||| ||||||||||| ||||||   |||     
T  19747635 cccgacgaacttatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgtgtgagcaagtcatggaactctctcatcaatgatt 19747536  T
Q  142 ccatcttcgtccaaatgcacctcaagaaatcatcacaaaacccacacatca 192  Q
    | | |||||| ||||  ||||||||||| || |||||||| ||||||||||    
T  19747535 cgaccttcgtacaaaaacacctcaagaagtcttcacaaaatccacacatca 19747485  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 33568077 - 33568150
Alignment:
Q  111 agcaaatcatggaactcactcatctccgatcccatcttcgtccaaatgcacctcaagaaatcatcacaaaaccc 184  Q
    ||||||||||||||||| |||||||||||||| |  || ||| |||||||| | ||||| || |||||||||||    
T  33568077 agcaaatcatggaactcgctcatctccgatccaacttttgtcaaaatgcactttaagaagtcgtcacaaaaccc 33568150  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 36339299 - 36339383
Alignment:
Q  100 tcaaatgtgtgagcaaatcatggaactcactcatctccgatcccatcttcgtccaaatgcacctcaagaaatcatcacaaaaccc 184  Q
    |||| ||||||||||| ||||||||| | |||||||| ||||| |  ||| || |||||||||| |||||||| |||||||||||    
T  36339299 tcaagtgtgtgagcaagtcatggaacactctcatctcagatccaactttcatcaaaatgcaccttaagaaatcttcacaaaaccc 36339383  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 53415029 - 53414948
Alignment:
Q  108 gtgagcaaatcatggaactcactcatctccgatcccatcttcgtccaaatgcacctcaagaaatcatcacaaaacccacaca 189  Q
    |||||||| || |||| | ||||||||||| ||||| |||| ||| ||||||| ||||| ||||| |||| |||||||||||    
T  53415029 gtgagcaactcttggaccacactcatctccaatcccttctttgtcaaaatgcatctcaataaatcttcacgaaacccacaca 53414948  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 163
Target Start/End: Original strand, 53773977 - 53774063
Alignment:
Q  77 tgacgtgaaatctcttacgaaactcaaatgtgtgagcaaatcatggaactcactcatctccgatcccatcttcgtccaaatgcacct 163  Q
    ||||||||| ||||||| |  ||| || | |||||| ||  |||||||| | |||||||||||||||||||||||| ||||||||||    
T  53773977 tgacgtgaattctcttatgctactgaagtttgtgagtaagccatggaacaccctcatctccgatcccatcttcgtcaaaatgcacct 53774063  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 23839889 - 23839931
Alignment:
Q  100 tcaaatgtgtgagcaaatcatggaactcactcatctccgatcc 142  Q
    |||||||||||||||| ||||||||| | ||||||||||||||    
T  23839889 tcaaatgtgtgagcaagtcatggaacactctcatctccgatcc 23839931  T

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Target: scaffold0707 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 4471 - 4544
Alignment:
Q  111 agcaaatcatggaactcactcatctccgatcccatcttcgtccaaatgcacctcaagaaatcatcacaaaaccc 184  Q
    ||||||||||||||||| |||||||||||||| |  || ||| |||||||| | ||||| || |||||||||||    
T  4471 agcaaatcatggaactcgctcatctccgatccaacttttgtcaaaatgcactttaagaagtcgtcacaaaaccc 4544  T

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Target: scaffold0097 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 17251 - 17122
Alignment:
Q  59 cgaaatcctatccttccttgacgtgaaatctcttacgaaactcaaatgtgtgagcaaatcatggaactcactcatctccgatcccatcttcgtccaaatg 158  Q
    ||||||||||||||| ||| | |||||| | ||||  |   |||| ||||||||||| |||||| |||| ||||||||| ||||| ||||| || |||      
T  17251 cgaaatcctatccttgcttaaagtgaaaccacttattaggttcaagtgtgtgagcaagtcatggtactctctcatctccaatcccttcttcatcaaaaaa 17152  T
Q  159 cacctcaagaaatcatcacaaaacccacac 188  Q
    ||||||   ||||| |||||||||||||||    
T  17151 cacctctttaaatcttcacaaaacccacac 17122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 11346026 - 11345970
Alignment:
Q  100 tcaaatgtgtgagcaaatcatggaactcactcatctccgatcccatcttcgtccaaa 156  Q
    ||||||| |||||||| ||||||||| | ||||||||||||||   |||||||||||    
T  11346026 tcaaatgcgtgagcaagtcatggaacactctcatctccgatccacccttcgtccaaa 11345970  T

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