View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18258_high_15 (Length: 239)
Name: NF18258_high_15
Description: NF18258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18258_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 35349153 - 35349355
Alignment:
| Q |
23 |
aagcttcttttagcgcgttatccaccgttcgtgcattttgtgggaaaaatatattagcaccatttagcactcctcaaatgataaacacacaaactaagtc |
122 |
Q |
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| T |
35349153 |
aagcttctttcagcgcgtcatccaccgttcgtacattttgtgcgaaaaatatattcgcaccatttagcactccacaaataataagcacacaaactaagtc |
35349252 |
T |
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| Q |
123 |
gtgcaatttgcacaaaaaacttgccgtacactttatcatttcccttttttcaattaggatacaaggataaaattgagaaaaatatatacatcagtgtgcc |
222 |
Q |
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| T |
35349253 |
gtgcaatttgcacaaaaaacttgtcgtacactttatcatttccc-tttttcaattaggatacaaggataaaattgagaaaaatatatacatcagtgtgcc |
35349351 |
T |
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| Q |
223 |
tcct |
226 |
Q |
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|||| |
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| T |
35349352 |
tcct |
35349355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 35344458 - 35344664
Alignment:
| Q |
10 |
tttataagtctgtaagcttcttttagcgcgttatccaccgttcgtgcattttgtgggaaaaatatattagcaccatttagcactcctcaaatgataaaca |
109 |
Q |
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||||||||||||| ||||||||| || | || ||||||||||| ||| ||||||| |||||||||||| ||| ||| | | |||||||||| ||||||| |
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| T |
35344458 |
tttataagtctgtgagcttctttcagtgtgtcatccaccgttcatgccttttgtgcgaaaaatatattcgcaacatacacccctcctcaaataataaaca |
35344557 |
T |
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| Q |
110 |
cacaaactaagtcgtgcaatttgcac-aaaaaacttgccgtacactttatcatttcccttttttcaattaggatacaaggataaaattgagaaaaatata |
208 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||| |
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| T |
35344558 |
cacaaactaagtcgtgcaatttgcacgaaaaaacttgtcgtccactttatcatttcctgtttttcaattaggataaaaggataaaattaagaaaaatata |
35344657 |
T |
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| Q |
209 |
tacatca |
215 |
Q |
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| T |
35344658 |
tacatca |
35344664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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