View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18258_high_16 (Length: 234)

Name: NF18258_high_16
Description: NF18258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18258_high_16
NF18258_high_16
[»] chr1 (22 HSPs)
chr1 (19-188)||(35263027-35263196)
chr1 (30-185)||(35270455-35270610)
chr1 (26-188)||(35276556-35276712)
chr1 (23-185)||(35199951-35200113)
chr1 (19-185)||(35147383-35147540)
chr1 (31-185)||(35224932-35225086)
chr1 (19-185)||(35190391-35190548)
chr1 (27-114)||(35248360-35248447)
chr1 (28-185)||(35295848-35296005)
chr1 (19-149)||(45525522-45525649)
chr1 (50-128)||(35252152-35252230)
chr1 (49-185)||(8638917-8639056)
chr1 (48-128)||(35208211-35208289)
chr1 (38-93)||(35212077-35212132)
chr1 (28-126)||(34309427-34309525)
chr1 (47-93)||(35194604-35194650)
chr1 (38-91)||(35476415-35476468)
chr1 (37-185)||(35219080-35219231)
chr1 (61-126)||(45531643-45531708)
chr1 (29-93)||(35189422-35189486)
chr1 (39-99)||(35205014-35205074)
chr1 (41-170)||(35474028-35474156)
[»] chr3 (5 HSPs)
chr3 (39-82)||(23331914-23331957)
chr3 (49-93)||(899766-899810)
chr3 (44-88)||(53924271-53924315)
chr3 (29-91)||(17664560-17664622)
chr3 (29-91)||(19246963-19247025)
[»] chr2 (2 HSPs)
chr2 (29-82)||(33138612-33138665)
chr2 (26-78)||(18558741-18558792)
[»] chr7 (1 HSPs)
chr7 (29-126)||(38631962-38632059)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 35263196 - 35263027
Alignment:
Q  19 acagagcagtaggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagt 118  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35263196 acagagcagtaggattgcaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagttcaggcatagaaaatgaagaagt 35263097  T
Q  119 ccagatgaatttgttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaatt 188  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35263096 ccagatgaatttgttagagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaatt 35263027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 30 - 185
Target Start/End: Complemental strand, 35270610 - 35270455
Alignment:
Q  30 ggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaatt 129  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||     
T  35270610 ggattgcaacgtcctagtgtgagaagtgatgggtggttggagattgagatgggggagttcttcaattcaggcatagaaaatgaagaagtccagatgaatg 35270511  T
Q  130 tgttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaa 185  Q
    || |  ||| ||||| ||||||||||||||| |||||  |||||||||||||||||    
T  35270510 tgatacagacaaagggtggtaattggaagagaggtctagttcttgaaggaatagaa 35270455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 35276712 - 35276556
Alignment:
Q  26 agtaggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatg 125  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||   ||  ||||||||| ||||||    
T  35276712 agtaggattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatgggggagttcttcaattcaggca---aatgtgaagaagttcagatg 35276616  T
Q  126 aatttgttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaatt 188  Q
    ||| || |||||||||||| |||   ||||||||||||||||||||||||||| ||| |||||    
T  35276615 aatgtgatggagataaagggtgg---ttggaagagtggtctctttcttgaagggatataaatt 35276556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 35200113 - 35199951
Alignment:
Q  23 agcagtaggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccag 122  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||  |||| |||||||||| ||     
T  35200113 agcagtaggattgcaacgccctagtgtgagaagcgatgggtggttggagattgaaatcggggagttcttcaattcaggcgaagaagatgaagaagttcaa 35200014  T
Q  123 atgaatttgttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaa 185  Q
    |||||| |   ||||| | | | |  ||||| |||||||||||||||||||||||||||||||    
T  35200013 atgaatataaaggagacagatgattataattcgaagagtggtctctttcttgaaggaatagaa 35199951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 35147540 - 35147383
Alignment:
Q  19 acagagcagtaggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagt 118  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   |||| || |||| ||||| ||| ||| ||    
T  35147540 acagagcagtaggattgcaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggag---ttcaattcaggcctagaagatggagacgt 35147444  T
Q  119 ccagatgaatttgttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaa 185  Q
    || ||||||| |   ||||| |||      |||||||||||||||||||||| ||||||||||||||    
T  35147443 cctgatgaatgttaaggagacaaa------taattggaagagtggtctctttgttgaaggaatagaa 35147383  T

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Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 185
Target Start/End: Complemental strand, 35225086 - 35224932
Alignment:
Q  31 gattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaattt 130  Q
    ||||| ||||||||| ||||||||||||||| ||||| |||||||||||||| |||||||||| || |||| ||||| ||||||||||||| |||| | |    
T  35225086 gattgcaacgtcctaatgtgagaagcgatggctggttagagattgagatgggagagttcttcatttcaggcctagaagatgaagaagtccaaatgagtgt 35224987  T
Q  131 gttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaa 185  Q
      | || ||||||| |||| |||||||||| ||| ||||| ||||||||||||||    
T  35224986 tattgatataaagggtggtcattggaagagaggtttctttgttgaaggaatagaa 35224932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 35190548 - 35190391
Alignment:
Q  19 acagagcagtaggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagt 118  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| || |||||||||| || |||| |||||   || |||||    
T  35190548 acagagcagtaggattgcaacgtcctagtgtgagaagtgatgggtggttggagattgagatcggagagttcttcaattcaggcctagaa---gatgaagt 35190452  T
Q  119 ccagatgaatttgttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaa 185  Q
    ||| |||||| |   ||||| |||      |||||||||||| ||||||||||||||||||||||||    
T  35190451 ccaaatgaatgttaaggagacaaa------taattggaagagaggtctctttcttgaaggaatagaa 35190391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 35248447 - 35248360
Alignment:
Q  27 gtaggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaag 114  Q
    ||||||||| || || ||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||    
T  35248447 gtaggattgcaaagttctattgtgagaagcgatgggtggtttgagattgagatgggggagttcttcaatttaggcctagaaaatgaag 35248360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 185
Target Start/End: Original strand, 35295848 - 35296005
Alignment:
Q  28 taggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaa 127  Q
    |||||||| |||  |||||||||||||| |||||||||||||||||||||||||| |||||||||| || |||| ||| | ||||||||||||| ||||     
T  35295848 taggattgcaacagcctagtgtgagaagtgatgggtggttggagattgagatgggagagttcttcaattcaggcttagtagatgaagaagtccaaatgag 35295947  T
Q  128 tttgttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaa 185  Q
    | |  |||| | ||||| |||| |  ||||||  ||| | ||||||||||||||||||    
T  35295948 tgttatggatacaaagggtggtcaggggaagacaggtttatttcttgaaggaatagaa 35296005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 45525649 - 45525522
Alignment:
Q  19 acagagcagtaggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagt 118  Q
    |||||| ||||||||||   |||||| |||||||||| |||||||||||||||||||||||||| |||   |||| || |||| | ||||||||||||||    
T  45525649 acagagtagtaggattgccgcgtcctggtgtgagaagtgatgggtggttggagattgagatgggagag---ttcaattcaggccttgaaaatgaagaagt 45525553  T
Q  119 ccagatgaatttgttggagataaaggctggt 149  Q
    |||||||| | |  | |||||||||||||||    
T  45525552 ccagatgagtgttatcgagataaaggctggt 45525522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 35252230 - 35252152
Alignment:
Q  50 gagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaat 128  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||| |||||||| |||| ||||||    
T  35252230 gagaagtgatgggtggtttgagattgagattggggagttcttcaatttaggcatagaatatgaagaaatccaaatgaat 35252152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 185
Target Start/End: Complemental strand, 8639056 - 8638917
Alignment:
Q  49 tgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaat-ttgttggagataaaggctg 147  Q
    ||||||| |||||||||||||||| ||||||||| |||||||||| || |||| ||||| ||||||||||||| |||| | ||  ||| |||||||| ||    
T  8639056 tgagaagtgatgggtggttggagactgagatgggagagttcttcaattcaggcttagaagatgaagaagtccaaatgagtattactgg-gataaaggatg 8638958  T
Q  148 g---taattggaagagtggtctctttcttgaaggaatagaa 185  Q
    |   || ||||||||| ||| ||||| ||||||||||||||    
T  8638957 gttatacttggaagagaggtttctttgttgaaggaatagaa 8638917  T

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Target: chr1; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 35208289 - 35208211
Alignment:
Q  48 gtgagaagcgatgggtggttggagattgagatgggggagttcttcagttta-ggcatagaaaatgaagaagtccagatgaat 128  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || | ||| |||||   ||||||||||||||||||    
T  35208289 gtgagaagcgatgggtggttggagattgagattggggagttcttcaattcatggcctagaa---gaagaagtccagatgaat 35208211  T

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Target: chr1; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 35212132 - 35212077
Alignment:
Q  38 acgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttca 93  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  35212132 acgtccgagtgtgagaagtgatgggtggttggagattgagatgggagagttcttca 35212077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 34309525 - 34309427
Alignment:
Q  28 taggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatga 126  Q
    |||||||| ||||||||| ||| ||||| ||||| |||||||||||||||||||| |||||||||| || | || | ||| |||||||| |||| ||||    
T  34309525 taggattgcaacgtcctaatgtaagaagtgatggatggttggagattgagatgggagagttcttcaattcaagccttgaagatgaagaaatccaaatga 34309427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 35194650 - 35194604
Alignment:
Q  47 tgtgagaagcgatgggtggttggagattgagatgggggagttcttca 93  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  35194650 tgtgagaagcgatgggtggttggagattgaaatgggggagttcttca 35194604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 35476468 - 35476415
Alignment:
Q  38 acgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttctt 91  Q
    |||||||||||||||| | |||||||||||||||||||||||||| ||||||||    
T  35476468 acgtcctagtgtgagacgtgatgggtggttggagattgagatgggagagttctt 35476415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 185
Target Start/End: Complemental strand, 35219231 - 35219080
Alignment:
Q  37 aacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaat-ttgttgg 135  Q
    ||||||||||| ||||||| |||| ||||||||| | ||||||||| |||||||||| || |||| ||  | ||||||||||||| |||| | ||  |||    
T  35219231 aacgtcctagtatgagaagtgatgagtggttggaaactgagatgggagagttcttcatttcaggcttaccagatgaagaagtccaaatgagtattactgg 35219132  T
Q  136 agataaaggctgg---taattggaagagtggtctctttcttgaaggaatagaa 185  Q
     |||||||| |||   | |||||||||| ||| ||||| ||||||||||||||    
T  35219131 -gataaaggatggttattattggaagagaggtttctttgttgaaggaatagaa 35219080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 45531708 - 45531643
Alignment:
Q  61 ggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatga 126  Q
    |||||| ||||||||||||||| |||||||||| || |||| | ||||||||||||||||| ||||    
T  45531708 ggtggtgggagattgagatgggagagttcttcaattcaggccttgaaaatgaagaagtccatatga 45531643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 35189486 - 35189422
Alignment:
Q  29 aggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttca 93  Q
    ||||||| || ||||| |||||||||| ||| |||||||||||||||  ||||||||||||||||    
T  35189486 aggattgcaatgtccttgtgtgagaagtgataggtggttggagattggaatgggggagttcttca 35189422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 35205074 - 35205014
Alignment:
Q  39 cgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttag 99  Q
    ||||||| ||||||||| |||||||||||||||||||||||||| || || |||| |||||    
T  35205074 cgtcctaatgtgagaagtgatgggtggttggagattgagatgggagattttttcaatttag 35205014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 170
Target Start/End: Complemental strand, 35474156 - 35474028
Alignment:
Q  41 tcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaatttgttggagata 140  Q
    ||||||||||| || ||| || |||||||| ||||||||| | ||  |||||| ||||||| ||||| ||| |||||| ||| ||| | |  | | ||||    
T  35474156 tcctagtgtgaaaa-cgaaggatggttggacattgagatgagagatatcttcaatttaggcctagaagatggagaagttcagctgagtgttattgcgata 35474058  T
Q  141 aaggctggtaattggaagagtggtctcttt 170  Q
    |||| |||| |||||||||||||| |||||    
T  35474057 aaggatggtcattggaagagtggtttcttt 35474028  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 23331957 - 23331914
Alignment:
Q  39 cgtcctagtgtgagaagcgatgggtggttggagattgagatggg 82  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  23331957 cgtcctaatgtgagaagcgatgggtggttggagattgagatggg 23331914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 899766 - 899810
Alignment:
Q  49 tgagaagcgatgggtggttggagattgagatgggggagttcttca 93  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||    
T  899766 tgagaagcgatgggtggttggagattgagatgggagagttattca 899810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 53924271 - 53924315
Alignment:
Q  44 tagtgtgagaagcgatgggtggttggagattgagatgggggagtt 88  Q
    |||| |||| |||||||||||||||||||||||||||||||||||    
T  53924271 tagtttgaggagcgatgggtggttggagattgagatgggggagtt 53924315  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 17664560 - 17664622
Alignment:
Q  29 aggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttctt 91  Q
    ||||||| ||||||||||||| ||| | ||||| |||||||||||||||||||| || |||||    
T  17664560 aggattgcaacgtcctagtgttagatgtgatggatggttggagattgagatgggagaattctt 17664622  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 19246963 - 19247025
Alignment:
Q  29 aggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttctt 91  Q
    ||||||| ||||||||||||| ||| | ||||| |||||||||||||||||||| || |||||    
T  19246963 aggattgcaacgtcctagtgttagatgtgatggatggttggagattgagatgggagaattctt 19247025  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 33138612 - 33138665
Alignment:
Q  29 aggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatggg 82  Q
    ||||||| | ||||||| ||||||||| ||||||||||||||||||||||||||    
T  33138612 aggattgcagcgtcctactgtgagaagtgatgggtggttggagattgagatggg 33138665  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 18558741 - 18558792
Alignment:
Q  26 agtaggattggaacgtcctagtgtgagaagcgatgggtggttggagattgaga 78  Q
    |||||||||| || |||||||||||||| | ||||||||||||||||||||||    
T  18558741 agtaggattgcaa-gtcctagtgtgagacgtgatgggtggttggagattgaga 18558792  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 38632059 - 38631962
Alignment:
Q  29 aggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatga 126  Q
    |||||||  |||| ||||||| |||| ||||||||||||||||||| | ||||| |||||||||| || || | |  || |||||||| |||||||||    
T  38632059 aggattgcgacgtgctagtgtaagaaacgatgggtggttggagattcatatgggagagttcttcacttcagaccttaaagatgaagaaatccagatga 38631962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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