View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18258_high_5 (Length: 415)
Name: NF18258_high_5
Description: NF18258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18258_high_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 21 - 415
Target Start/End: Complemental strand, 20567322 - 20566926
Alignment:
| Q |
21 |
ttagaacctaaattttcgcggttgccaccgccggaatcacca---ttactttgcatatgacgattggagaaaaacaaattcatatctttggaacaccttg |
117 |
Q |
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| T |
20567322 |
ttagaacctaaattttcgccgttgccgccaccggaatcaccaccattactttgcatatgacgattggagaaaaacaaattcatatctttggaacaccttg |
20567223 |
T |
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| Q |
118 |
gacaattagcctcagcccgaattttccgggtcgggttctgcatatcaccatccgacccaccacggccccacttgtacctttcttgaactccgaccaccgc |
217 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| |
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| T |
20567222 |
gacaattagcctcagcccggattttccgggtcgggttttgcatatcaccatccgacccaccacgtccccacttgt-cctttcttgaactccaaccaccgc |
20567124 |
T |
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| Q |
218 |
cacccgccggcattgtttgccacctccggcaactatgatatgattcagatgagttgaaatcgcctgaacccggttgaaccggtttaataaagtgaacccg |
317 |
Q |
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|||||||||||||||||| |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20567123 |
cacccgccggcattgtttaccacatccggcaactatgatgtgattcagatgggttgaaatcgcctgaacccggttgaaccggtttaataaactgaacccg |
20567024 |
T |
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| Q |
318 |
gttcgacggttacctgaaccaaattccatgtgggtcccatgaaatgaagtcatttccttcannnnnnngcatcttgagatgaatcgagacatgggtaa |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20567023 |
gttcgacggttacctgaaccaaattccatgtgggtcccatgaaatgaagtcatttccttcatttttttgcatcttgagatgaatcgagacatgggtaa |
20566926 |
T |
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