View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18258_high_6 (Length: 376)

Name: NF18258_high_6
Description: NF18258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18258_high_6
NF18258_high_6
[»] chr3 (31 HSPs)
chr3 (11-306)||(54574247-54574542)
chr3 (10-90)||(55157522-55157602)
chr3 (228-298)||(27542034-27542104)
chr3 (228-307)||(14898038-14898117)
chr3 (228-299)||(24560287-24560358)
chr3 (246-299)||(25655093-25655146)
chr3 (230-297)||(2387865-2387932)
chr3 (228-299)||(18654703-18654774)
chr3 (232-299)||(21773852-21773919)
chr3 (228-299)||(41110424-41110495)
chr3 (247-298)||(46204957-46205008)
chr3 (228-307)||(46556205-46556286)
chr3 (226-296)||(51819226-51819296)
chr3 (228-284)||(41040053-41040109)
chr3 (248-307)||(651793-651852)
chr3 (228-295)||(16275808-16275875)
chr3 (234-296)||(10748406-10748468)
chr3 (228-285)||(36569006-36569063)
chr3 (228-273)||(37807176-37807221)
chr3 (228-284)||(9312574-9312630)
chr3 (228-295)||(28582612-28582679)
chr3 (230-293)||(40463976-40464039)
chr3 (247-298)||(43005861-43005912)
chr3 (247-278)||(49815512-49815543)
chr3 (333-363)||(21773787-21773817)
chr3 (324-362)||(42772050-42772088)
chr3 (228-285)||(52185100-52185157)
chr3 (334-362)||(6803411-6803439)
chr3 (247-299)||(30200213-30200265)
chr3 (228-296)||(52473988-52474056)
chr3 (326-362)||(55428581-55428617)
[»] chr4 (29 HSPs)
chr4 (228-307)||(36151638-36151717)
chr4 (228-307)||(26166999-26167078)
chr4 (228-299)||(27735815-27735886)
chr4 (228-299)||(35248756-35248827)
chr4 (228-299)||(37711213-37711284)
chr4 (228-299)||(45741960-45742031)
chr4 (230-296)||(6891433-6891499)
chr4 (228-299)||(1968462-1968533)
chr4 (228-299)||(2917066-2917137)
chr4 (228-299)||(5730933-5731004)
chr4 (228-299)||(31348424-31348495)
chr4 (228-299)||(49735571-49735642)
chr4 (228-299)||(54320504-54320575)
chr4 (228-298)||(54935139-54935210)
chr4 (228-298)||(16400871-16400941)
chr4 (230-307)||(17938212-17938290)
chr4 (228-300)||(46007804-46007876)
chr4 (228-307)||(28332866-28332945)
chr4 (228-295)||(44784066-44784133)
chr4 (228-279)||(45132604-45132655)
chr4 (237-307)||(47433820-47433891)
chr4 (324-362)||(44145779-44145817)
chr4 (324-362)||(46007901-46007939)
chr4 (324-362)||(49735474-49735512)
chr4 (324-362)||(49735692-49735730)
chr4 (324-362)||(54320634-54320672)
chr4 (324-362)||(56135755-56135793)
chr4 (227-285)||(56135833-56135891)
chr4 (228-296)||(2247906-2247973)
[»] chr8 (32 HSPs)
chr8 (229-305)||(3726959-3727035)
chr8 (228-300)||(30664430-30664502)
chr8 (228-295)||(31543175-31543242)
chr8 (230-297)||(41103611-41103678)
chr8 (228-296)||(11575509-11575577)
chr8 (228-299)||(6315132-6315203)
chr8 (228-285)||(1026952-1027009)
chr8 (228-296)||(7503057-7503125)
chr8 (228-296)||(29358442-29358510)
chr8 (232-296)||(42650443-42650507)
chr8 (228-307)||(31738485-31738564)
chr8 (228-307)||(37032441-37032520)
chr8 (228-307)||(37923181-37923260)
chr8 (228-298)||(9718582-9718652)
chr8 (231-307)||(28083804-28083880)
chr8 (228-299)||(11033487-11033558)
chr8 (228-299)||(16653019-16653090)
chr8 (228-299)||(40990287-40990358)
chr8 (228-285)||(36308927-36308984)
chr8 (228-296)||(2248525-2248593)
chr8 (228-300)||(13405045-13405117)
chr8 (228-295)||(1281217-1281284)
chr8 (228-299)||(7979210-7979281)
chr8 (228-299)||(33922590-33922661)
chr8 (228-298)||(11785597-11785667)
chr8 (247-285)||(30479839-30479877)
chr8 (247-285)||(34633821-34633859)
chr8 (228-285)||(4247620-4247677)
chr8 (333-362)||(4247729-4247758)
chr8 (238-295)||(10028184-10028241)
chr8 (326-362)||(7394663-7394699)
chr8 (231-279)||(30581916-30581964)
[»] chr2 (34 HSPs)
chr2 (228-299)||(36347644-36347715)
chr2 (228-299)||(19566924-19566995)
chr2 (228-285)||(37739994-37740051)
chr2 (228-299)||(2241480-2241551)
chr2 (228-299)||(23748165-23748236)
chr2 (234-296)||(16565850-16565912)
chr2 (228-297)||(15224797-15224866)
chr2 (228-285)||(39732832-39732889)
chr2 (229-300)||(8426975-8427046)
chr2 (231-285)||(31795875-31795929)
chr2 (228-285)||(12541850-12541907)
chr2 (228-284)||(17379897-17379953)
chr2 (228-296)||(36566954-36567022)
chr2 (247-298)||(40022441-40022492)
chr2 (247-298)||(41841753-41841804)
chr2 (237-298)||(12751885-12751947)
chr2 (230-299)||(28262548-28262617)
chr2 (229-285)||(6721726-6721782)
chr2 (247-298)||(9427056-9427107)
chr2 (247-285)||(7681332-7681370)
chr2 (324-362)||(17379852-17379890)
chr2 (230-284)||(18811413-18811467)
chr2 (328-362)||(31795968-31796002)
chr2 (324-362)||(35736181-35736219)
chr2 (228-294)||(39821744-39821810)
chr2 (247-285)||(41778857-41778895)
chr2 (228-270)||(42316867-42316909)
chr2 (228-277)||(9631652-9631701)
chr2 (324-365)||(31061560-31061601)
chr2 (247-296)||(32503232-32503281)
chr2 (321-362)||(36046398-36046439)
chr2 (324-360)||(17334012-17334048)
chr2 (245-285)||(29525853-29525893)
chr2 (247-299)||(35736245-35736297)
[»] chr1 (26 HSPs)
chr1 (226-307)||(40095034-40095116)
chr1 (228-299)||(50744384-50744455)
chr1 (231-307)||(44211011-44211087)
chr1 (228-299)||(10391942-10392013)
chr1 (228-299)||(30010402-30010473)
chr1 (228-299)||(32951421-32951492)
chr1 (229-299)||(38509998-38510068)
chr1 (228-285)||(41676363-41676420)
chr1 (247-361)||(2859054-2859169)
chr1 (228-307)||(8529861-8529940)
chr1 (228-299)||(35349565-35349636)
chr1 (228-299)||(45585788-45585859)
chr1 (228-299)||(51597738-51597809)
chr1 (228-300)||(49946691-49946763)
chr1 (228-294)||(26940946-26941012)
chr1 (228-285)||(36285677-36285734)
chr1 (228-284)||(41498489-41498545)
chr1 (324-362)||(26324020-26324058)
chr1 (324-362)||(30010338-30010376)
chr1 (324-362)||(40094939-40094977)
chr1 (228-278)||(42230629-42230679)
chr1 (228-285)||(7444579-7444636)
chr1 (231-284)||(42742416-42742469)
chr1 (246-295)||(47261343-47261392)
chr1 (228-300)||(6563646-6563717)
chr1 (247-299)||(12234080-12234132)
[»] chr5 (40 HSPs)
chr5 (228-307)||(9856942-9857021)
chr5 (228-285)||(10476112-10476169)
chr5 (228-299)||(13634781-13634852)
chr5 (228-294)||(10072750-10072816)
chr5 (228-284)||(36392253-36392309)
chr5 (228-299)||(7544206-7544277)
chr5 (228-299)||(26414963-26415034)
chr5 (229-307)||(9798716-9798794)
chr5 (229-299)||(16938549-16938619)
chr5 (226-299)||(8502936-8503009)
chr5 (228-285)||(28279579-28279636)
chr5 (232-299)||(2550459-2550526)
chr5 (228-299)||(4373669-4373740)
chr5 (228-307)||(14681531-14681610)
chr5 (256-299)||(22022920-22022963)
chr5 (228-307)||(37606957-37607035)
chr5 (228-298)||(11756948-11757018)
chr5 (228-294)||(17024327-17024393)
chr5 (228-278)||(37551498-37551548)
chr5 (228-278)||(37654328-37654378)
chr5 (228-285)||(37779187-37779244)
chr5 (230-299)||(42681523-42681592)
chr5 (246-285)||(20513570-20513609)
chr5 (231-286)||(34980893-34980948)
chr5 (232-307)||(40815359-40815433)
chr5 (324-362)||(2550552-2550590)
chr5 (324-362)||(7544336-7544374)
chr5 (324-362)||(13634717-13634755)
chr5 (324-362)||(13634911-13634949)
chr5 (324-362)||(14245094-14245132)
chr5 (324-362)||(14245246-14245284)
chr5 (324-362)||(15986824-15986862)
chr5 (324-362)||(16938485-16938523)
chr5 (328-362)||(34980816-34980850)
chr5 (228-298)||(36363103-36363173)
chr5 (252-285)||(10650513-10650546)
chr5 (247-296)||(39966074-39966123)
chr5 (334-362)||(8551628-8551656)
chr5 (330-362)||(14681476-14681508)
chr5 (228-292)||(29002309-29002373)
[»] chr7 (30 HSPs)
chr7 (228-285)||(22163212-22163269)
chr7 (228-285)||(22221920-22221977)
chr7 (228-297)||(33655211-33655280)
chr7 (228-296)||(24970268-24970336)
chr7 (228-299)||(40572337-40572408)
chr7 (228-299)||(41497060-41497131)
chr7 (228-300)||(45940759-45940831)
chr7 (228-299)||(25887262-25887333)
chr7 (247-298)||(34228440-34228491)
chr7 (231-285)||(17852955-17853009)
chr7 (228-285)||(34235110-34235167)
chr7 (247-296)||(40196654-40196703)
chr7 (230-298)||(26365839-26365907)
chr7 (247-299)||(42306404-42306456)
chr7 (228-296)||(43230309-43230377)
chr7 (231-286)||(18063667-18063722)
chr7 (232-299)||(37417740-37417807)
chr7 (228-298)||(47390926-47390997)
chr7 (232-298)||(1051605-1051671)
chr7 (231-285)||(23116366-23116420)
chr7 (325-362)||(28074109-28074146)
chr7 (247-362)||(39855987-39856103)
chr7 (228-296)||(42087068-42087136)
chr7 (228-283)||(10315719-10315774)
chr7 (228-299)||(13771049-13771120)
chr7 (228-271)||(31571571-31571614)
chr7 (324-362)||(28074308-28074346)
chr7 (324-362)||(36267753-36267791)
chr7 (324-362)||(37925847-37925885)
chr7 (250-294)||(48152055-48152099)
[»] chr6 (25 HSPs)
chr6 (228-300)||(31849179-31849251)
chr6 (228-299)||(5585405-5585476)
chr6 (230-299)||(2892708-2892777)
chr6 (228-285)||(4097615-4097672)
chr6 (228-299)||(19278141-19278212)
chr6 (228-299)||(30487408-30487479)
chr6 (228-299)||(33236021-33236092)
chr6 (229-307)||(13583781-13583859)
chr6 (247-300)||(2893699-2893752)
chr6 (234-299)||(25741477-25741542)
chr6 (246-285)||(5381304-5381343)
chr6 (324-362)||(9721144-9721182)
chr6 (253-307)||(12811108-12811162)
chr6 (324-362)||(23091001-23091039)
chr6 (228-285)||(21606947-21607004)
chr6 (228-296)||(34176408-34176476)
chr6 (230-277)||(32926737-32926784)
chr6 (254-300)||(6034201-6034247)
chr6 (324-362)||(9719037-9719075)
chr6 (324-362)||(14515479-14515517)
chr6 (231-281)||(14515559-14515609)
chr6 (228-296)||(1300692-1300761)
chr6 (230-307)||(16738101-16738178)
chr6 (330-362)||(4097241-4097273)
chr6 (326-362)||(10818235-10818271)
[»] scaffold0262 (1 HSPs)
scaffold0262 (228-299)||(16399-16470)
[»] scaffold0096 (1 HSPs)
scaffold0096 (228-307)||(6646-6724)
[»] scaffold0294 (1 HSPs)
scaffold0294 (228-285)||(15347-15404)
[»] scaffold0067 (1 HSPs)
scaffold0067 (228-299)||(39290-39364)
[»] scaffold0171 (1 HSPs)
scaffold0171 (228-307)||(16012-16091)
[»] scaffold0341 (1 HSPs)
scaffold0341 (228-300)||(18839-18910)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 306
Target Start/End: Original strand, 54574247 - 54574542
Alignment:
Q  11 cacagattagagttagtattgactgcaatcatgcagctttattagatattttcgttattctattaaatacagtaaattagcaagttctgcatattcattt 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54574247 cacaaattagagttagtattgactgcaatcatgcagctttattagatattttcgttattctattaaatacagtaaattagcaagttctgcatattcattt 54574346  T
Q  111 actggaaaagttttgaacagaaagatgatttttaggttacttgaacaacatgcctatcaatcttaatctacatgttttgatgtgccaagcatacataaga 210  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54574347 actggaaaagttttgaacagaaagatgatttttaggtcacttgaacaacatgcctatcaatcttaatctacatgttttgatgtgccaagcatacataaga 54574446  T
Q  211 tccttcattacttgtaaattaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaatt 306  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  54574447 tccttcattacttgtaaattaatatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaacgtgttatatagtctgtaatt 54574542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 55157522 - 55157602
Alignment:
Q  10 gcacagattagagttagtattgactgcaatcatgcagctttattagatattttcgttattctattaaatacagtaaattag 90  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55157522 gcacaaattagagttagtactgactgcaatcatgcagctttattagatattttcgttattctattaaatacagtaaattag 55157602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 228 - 298
Target Start/End: Original strand, 27542034 - 27542104
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagt 298  Q
    |||||||||||||||| | ||||||||||||||||||  |||||||||||||||||||| |||||||||||    
T  27542034 attaacatgataaacgatcatataatacttcaatcacagttaatttattttagaaaaatatgttatatagt 27542104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 14898117 - 14898038
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaattt 307  Q
    ||||||| |||||||| | |||||||||||||||||| ||||||||||||||||||||  ||| ||||||||| ||||||    
T  14898117 attaacacgataaacgatcatataatacttcaatcacacttaatttattttagaaaaacatgtcatatagtctgtaattt 14898038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 24560358 - 24560287
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||| | ||||||||||||||||||  |||||||||||||||||||  ||||| ||||||    
T  24560358 attaacatgataaacgatcatataatacttcaatcacatttaatttattttagaaaaacatgttacatagtc 24560287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 25655093 - 25655146
Alignment:
Q  246 tatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    ||||||||||||||||||| ||||||||||||||||||||  ||||||||||||    
T  25655093 tatataatacttcaatcacacttaatttattttagaaaaacatgttatatagtc 25655146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 2387865 - 2387932
Alignment:
Q  230 taacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatag 297  Q
    |||||||||||||| | |||||||| || |||||| ||||||||||||||||||||  ||||||||||    
T  2387865 taacatgataaacgatcatataataatttaatcacacttaatttattttagaaaaacatgttatatag 2387932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 18654703 - 18654774
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||| | | ||||||||||||||| || |||||||||||||||| |||  ||||||||||||    
T  18654703 attaacatgataaatgatcatataatacttcaattacacttaatttattttagagaaacatgttatatagtc 18654774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 21773919 - 21773852
Alignment:
Q  232 acatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||  | ||||||| |||||||||| ||||||||||||||||||||  ||||||||||||    
T  21773919 acatgataaacaatcatataattcttcaatcacacttaatttattttagaaaaacatgttatatagtc 21773852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 41110424 - 41110495
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||  | |||||||||||||||||| ||||||||||||| ||||||  |||||| |||||    
T  41110424 attaacatgataaacaatcatataatacttcaatcacacttaatttattttcgaaaaacatgttatctagtc 41110495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 298
Target Start/End: Complemental strand, 46205008 - 46204957
Alignment:
Q  247 atataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagt 298  Q
    |||||||||||||||||| ||||||||||||||||||||  |||||||||||    
T  46205008 atataatacttcaatcacacttaatttattttagaaaaacatgttatatagt 46204957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 46556286 - 46556205
Alignment:
Q  228 attaacatgataaacggt--tatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaattt 307  Q
    |||||||||| |||||||  ||||||||||||||||||| || |||||||||| ||||||  | ||||||||||| ||||||    
T  46556286 attaacatgacaaacggtcatatataatacttcaatcacactcaatttattttggaaaaacatattatatagtctgtaattt 46556205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 51819226 - 51819296
Alignment:
Q  226 aaattaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatata 296  Q
    |||||||||||||||||| |  ||||||||||||||||| || ||||||||||| |||||| | |||||||    
T  51819226 aaattaacatgataaacgatcgtataatacttcaatcacactaaatttattttaaaaaaatatattatata 51819296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 41040053 - 41040109
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaa 284  Q
    |||||||||||||||  | ||||||||||||||||||||||| ||||||||| ||||    
T  41040053 attaacatgataaacaatcatataatacttcaatcacgcttactttattttaaaaaa 41040109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 651852 - 651793
Alignment:
Q  248 tataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaattt 307  Q
    ||||||| || |||||| ||||||||||||||||||||  ||||||||||||| ||||||    
T  651852 tataatattttaatcacacttaatttattttagaaaaacatgttatatagtctataattt 651793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 16275808 - 16275875
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatat 295  Q
    |||||||||||||||    |||||||||||||||||| ||| ||||||||||||||||  ||||||||    
T  16275808 attaacatgataaacaaccatataatacttcaatcacacttgatttattttagaaaaacatgttatat 16275875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 10748406 - 10748468
Alignment:
Q  234 atgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatata 296  Q
    |||||||| ||| |||||||||||  ||||| ||||||||||||||||||||  |||||||||    
T  10748406 atgataaaaggtcatataatacttttatcacacttaatttattttagaaaaacatgttatata 10748468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 36569006 - 36569063
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||||||||||||||  |  ||||||| ||||||||| ||||||||||||||||||||    
T  36569006 attaacatgataaacaatcgtataatagttcaatcacacttaatttattttagaaaaa 36569063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 37807221 - 37807176
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaattt 273  Q
    |||||||||||||||| | |||||||||||||||||| ||||||||    
T  37807221 attaacatgataaacgatcatataatacttcaatcacacttaattt 37807176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 9312574 - 9312630
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaa 284  Q
    |||||||||||||||  | ||||||||||  |||||| |||||||||||||||||||    
T  9312574 attaacatgataaacaatcatataatactcaaatcacacttaatttattttagaaaa 9312630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 28582612 - 28582679
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatat 295  Q
    |||||||| ||||||| | |||||||||||||| ||| ||| |||||| |||||||||  ||||||||    
T  28582612 attaacataataaacgataatataatacttcaaccacacttgatttatcttagaaaaacatgttatat 28582679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 40463976 - 40464039
Alignment:
Q  230 taacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttat 293  Q
    |||||||||||||  | |||||| | ||||||| | ||||||||||||||||||||| ||||||    
T  40463976 taacatgataaacaatcatataaaaattcaatctcacttaatttattttagaaaaatatgttat 40464039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 298
Target Start/End: Original strand, 43005861 - 43005912
Alignment:
Q  247 atataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagt 298  Q
    |||||||||||||||||   | |||||||||||||||||| |||||||||||    
T  43005861 atataatacttcaatcaaattaaatttattttagaaaaatatgttatatagt 43005912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 278
Target Start/End: Complemental strand, 49815543 - 49815512
Alignment:
Q  247 atataatacttcaatcacgcttaatttatttt 278  Q
    ||||||||||||||||||||||||||||||||    
T  49815543 atataatacttcaatcacgcttaatttatttt 49815512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 363
Target Start/End: Complemental strand, 21773817 - 21773787
Alignment:
Q  333 ccttcccctcctaaaccttcaatccaaacat 363  Q
    |||||||||||||||||||||||||||||||    
T  21773817 ccttcccctcctaaaccttcaatccaaacat 21773787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 42772088 - 42772050
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  42772088 cctcccctcccttcccctcttaaaccttcaatccaaaca 42772050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 52185157 - 52185100
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||||||||||||||  | ||||||||||||||| |   |||||||||||||||||||    
T  52185157 attaacatgataaacaatcatataatacttcaattatatttaatttattttagaaaaa 52185100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 362
Target Start/End: Original strand, 6803411 - 6803439
Alignment:
Q  334 cttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||||||||||||||||||||||||    
T  6803411 cttcccctcctaaaccttcaatccaaaca 6803439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 30200213 - 30200265
Alignment:
Q  247 atataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    ||||| ||||| |||||| ||| ||||||||||||||||  ||||||||||||    
T  30200213 atatagtactttaatcacacttgatttattttagaaaaacatgttatatagtc 30200265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 52474056 - 52473988
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatata 296  Q
    ||||| ||||||||| || ||||||||||||||||||   |||||||||||| || ||  |||||||||    
T  52474056 attaatatgataaacagtcatataatacttcaatcacatgtaatttattttaaaataacatgttatata 52473988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 362
Target Start/End: Original strand, 55428581 - 55428617
Alignment:
Q  326 tccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  55428581 tcccctcccttcccctcctaaaccctcaatccaaaca 55428617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 36151717 - 36151638
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaattt 307  Q
    |||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||  ||||||||||||| ||||||    
T  36151717 attaacatgataaacgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagtctgtaattt 36151638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 26167078 - 26166999
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaattt 307  Q
    |||||||||||||||| | |||||||||||||||||| |||||||||||||||| |||  ||||||||||||| ||||||    
T  26167078 attaacatgataaacgatcatataatacttcaatcacacttaatttattttagagaaacatgttatatagtctgtaattt 26166999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 27735886 - 27735815
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||| | | |||||||||||||||||| |||||||||||||| |||||  ||||||||||||    
T  27735886 attaacatgataaatgatcatataatacttcaatcacacttaatttattttaaaaaaacatgttatatagtc 27735815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 35248827 - 35248756
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    ||||||||||||||   | |||||||||||||||||| ||||||||||||||||||||  ||||||||||||    
T  35248827 attaacatgataaataatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagtc 35248756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 37711284 - 37711213
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||| | | |||||||||||||||||| |||||||||||||||| |||  ||||||||||||    
T  37711284 attaacatgataaatgatcatataatacttcaatcacacttaatttattttagagaaacatgttatatagtc 37711213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 45742031 - 45741960
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||| | ||||||||||||||||||  |||||||||||||||||||   |||||||||||    
T  45742031 attaacatgataaacgatcatataatacttcaatcacatttaatttattttagaaaaacaagttatatagtc 45741960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 6891499 - 6891433
Alignment:
Q  230 taacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatata 296  Q
    |||||| ||||||| | |||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  6891499 taacattataaacgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatata 6891433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 1968462 - 1968533
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||| | |||||||||||||||||| | | ||||||||||||||||  | ||||||||||    
T  1968462 attaacatgataaacgatcatataatacttcaatcacacctgatttattttagaaaaacatattatatagtc 1968533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 2917066 - 2917137
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||| | ||||||||||||||||||  | ||||||||||||||||   ||||||||||||    
T  2917066 attaacatgataaacgatcatataatacttcaatcacaataaatttattttagaaaatcatgttatatagtc 2917137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 5730933 - 5731004
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||| | | ||||||||||||||| || |||||||||||||||| |||  ||||||||||||    
T  5730933 attaacatgataaatgatcatataatacttcaattacacttaatttattttagagaaacatgttatatagtc 5731004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 31348424 - 31348495
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||  | |||||||| ||||||||| | ||||||||||||||||||  ||||||||||||    
T  31348424 attaacatgataaacaatcatataataattcaatcacacataatttattttagaaaaacatgttatatagtc 31348495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 49735571 - 49735642
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||| | |||||||| ||| ||||| ||| ||||||||||||||||  ||||||||||||    
T  49735571 attaacatgataaacgataatataatatttctatcacacttgatttattttagaaaaacatgttatatagtc 49735642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 54320575 - 54320504
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||  | |||||||||| ||||||| ||||||||||||||||||||  || |||||||||    
T  54320575 attaacatgataaacaatcatataatactccaatcacacttaatttattttagaaaaacatgatatatagtc 54320504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 54935210 - 54935139
Alignment:
Q  228 attaacatgataaacggttatataa-tacttcaatcacgcttaatttattttagaaaaatgtgttatatagt 298  Q
    ||||| |||||||||| | |||||| |||||||||||| ||||||||||||||||||||  |||||||||||    
T  54935210 attaatatgataaacgatcatataaatacttcaatcacacttaatttattttagaaaaacatgttatatagt 54935139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 16400941 - 16400871
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagt 298  Q
    |||||||||||||||| | |||||||||||||||||   |||||||||||||||||||  |||| ||||||    
T  16400941 attaacatgataaacgatcatataatacttcaatcataattaatttattttagaaaaacatgttgtatagt 16400871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 307
Target Start/End: Original strand, 17938212 - 17938290
Alignment:
Q  230 taacatgataaacggttatataatacttcaatcacgcttaatttattt-tagaaaaatgtgttatatagtctttaattt 307  Q
    |||||||||||||| | |||||||||||||||||| ||||||||||||  | |||||| ||||||||||| | ||||||    
T  17938212 taacatgataaacgatcatataatacttcaatcacacttaatttatttaaaaaaaaatatgttatatagtttgtaattt 17938290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 46007804 - 46007876
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtct 300  Q
    |||||||||||||| | | |||||||||||||||| | |||||||||||||| |||||   ||||||||||||    
T  46007804 attaacatgataaatgatcatataatacttcaatctcacttaatttattttacaaaaacaagttatatagtct 46007876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 28332945 - 28332866
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaattt 307  Q
    |||||| || |||||| | |||||||||||||||||  ||||||||| ||||||||||  ||||||||||| | ||||||    
T  28332945 attaacctggtaaacgatcatataatacttcaatcatacttaatttactttagaaaaacctgttatatagtatgtaattt 28332866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 44784133 - 44784066
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatat 295  Q
    |||||| | ||||||| | |||||||||||||||||| ||||||||| ||||||||||  ||||||||    
T  44784133 attaaccttataaacgatcatataatacttcaatcacacttaatttactttagaaaaacctgttatat 44784066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 45132604 - 45132655
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttatttta 279  Q
    ||||| |||||||||| | |||||||||||||||||| ||||||||||||||    
T  45132604 attaaaatgataaacgatcatataatacttcaatcacacttaatttatttta 45132655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 307
Target Start/End: Original strand, 47433820 - 47433891
Alignment:
Q  237 ataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgtta-tatagtctttaattt 307  Q
    ||||||| | |||||||||||||||||| |||||||||||||| |||||  ||||| |||||||| ||||||    
T  47433820 ataaacgatcatataatacttcaatcacacttaatttattttaaaaaaacatgttattatagtctgtaattt 47433891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 44145817 - 44145779
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  44145817 cctcccctcccttcccctcctaaaccttgaatccaaaca 44145779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Original strand, 46007901 - 46007939
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  46007901 cctcccctcccttcccctcctaaaccctcaatccaaaca 46007939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 49735512 - 49735474
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  49735512 cctcccctcccttcccctcctaaaccctcaatccaaaca 49735474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Original strand, 49735692 - 49735730
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  49735692 cctcccctcccttcccctcctaaaccctcaatccaaaca 49735730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Original strand, 54320634 - 54320672
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  54320634 cctcccctcccttcccctcctaaaccctcaatccaaaca 54320672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 56135793 - 56135755
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  56135793 cctcccctcccttcccctcctaaaccctcaatccaaaca 56135755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 56135891 - 56135833
Alignment:
Q  227 aattaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    ||||||||||||||| | | ||||||||||||||  || |||||||||||||| |||||    
T  56135891 aattaacatgataaatgatcatataatacttcaaaaacacttaatttattttaaaaaaa 56135833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 2247906 - 2247973
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatata 296  Q
    ||||| |||||||||  |||||||||||||||||||| | | |||| |||||||||||  |||||||||    
T  2247906 attaatatgataaacaattatataatacttcaatcacacat-attttttttagaaaaacatgttatata 2247973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 3726959 - 3727035
Alignment:
Q  229 ttaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaat 305  Q
    ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||  ||||||||||||| ||||    
T  3726959 ttaacatgataaacggtcatataatatttcaatcatgcttaatttattttagaaaaacatgttatatagtctgtaat 3727035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 30664502 - 30664430
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtct 300  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||  ||||||| |||||    
T  30664502 attaatatgataaacggttatataatacttcaatcacacttaatttatttttgaaaaacatgttataaagtct 30664430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 31543175 - 31543242
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatat 295  Q
    |||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  31543175 attaacatcataaacggtcatataatacttcaatcacacttaatttattttagaaaaacatgttatat 31543242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 41103611 - 41103678
Alignment:
Q  230 taacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatag 297  Q
    |||||||||||||| | |||||||||||||||||| ||||||||||||||||||||  ||||||||||    
T  41103611 taacatgataaacgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatag 41103678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 11575509 - 11575577
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatata 296  Q
    |||||||||||||||| | ||||||||||| |||||| ||||||||||||||||||||  |||||||||    
T  11575509 attaacatgataaacgatcatataatactttaatcacacttaatttattttagaaaaacatgttatata 11575577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 6315203 - 6315132
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||| ||||||||| |  ||||||||||||||||| ||||||||||||||||||||  ||||||||||||    
T  6315203 attaacttgataaacgatcgtataatacttcaatcacacttaatttattttagaaaaacatgttatatagtc 6315132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 1026952 - 1027009
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||||||||||||||| | |||||||||||||||||  ||||||||||||||||||||    
T  1026952 attaacatgataaacgatcatataatacttcaatcatacttaatttattttagaaaaa 1027009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 7503057 - 7503125
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatata 296  Q
    |||||||||||||||  | ||||||||||| |||||| ||||||||||||||||||||  |||||||||    
T  7503057 attaacatgataaacaatcatataatactttaatcacacttaatttattttagaaaaacatgttatata 7503125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 29358442 - 29358510
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatata 296  Q
    |||||||| ||||||| |  ||||||||||||||||| ||||||||||| ||||||||| |||||||||    
T  29358442 attaacattataaacgatcctataatacttcaatcacacttaatttattctagaaaaatatgttatata 29358510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 42650443 - 42650507
Alignment:
Q  232 acatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatata 296  Q
    |||||||||||  | |||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  42650443 acatgataaacaatcatataatacttcaatcacacttaatttattttagaaaaacatgttatata 42650507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 31738564 - 31738485
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaattt 307  Q
    |||||||||||||| | | ||||||||||||||| || ||||||||||| |||| |||  ||||||||||||| ||||||    
T  31738564 attaacatgataaatgatcatataatacttcaattacacttaatttattctagagaaacatgttatatagtctgtaattt 31738485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 37032520 - 37032441
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaattt 307  Q
    ||||| |||||||||  | ||||||||||| |||||| |||||||||||||| |||||  ||||||||||||| ||||||    
T  37032520 attaagatgataaactatcatataatactttaatcacacttaatttattttaaaaaaacatgttatatagtctgtaattt 37032441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 307
Target Start/End: Original strand, 37923181 - 37923260
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaattt 307  Q
    |||||||||||||| | | |||||||| || |||| | ||||||||||||||||||||  ||||||||||||| ||||||    
T  37923181 attaacatgataaatgatcatataatattttaatcgcacttaatttattttagaaaaacatgttatatagtctgtaattt 37923260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 298
Target Start/End: Original strand, 9718582 - 9718652
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagt 298  Q
    |||||||||||||||  | ||||||||||||||||||  |||||  ||||||||||||| |||||||||||    
T  9718582 attaacatgataaacaatcatataatacttcaatcacaattaatgaattttagaaaaatatgttatatagt 9718652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 28083880 - 28083804
Alignment:
Q  231 aacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaattt 307  Q
    ||||||||||||  | |||||||||| ||||||| |||||||||||||||| |||  |||||||| |||| ||||||    
T  28083880 aacatgataaacaatcatataatactccaatcacacttaatttattttagagaaacatgttatattgtctgtaattt 28083804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 11033558 - 11033487
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||| | |||||||  ||||||||| | ||||||||||||||||||  || |||||||||    
T  11033558 attaacatgataaacgatcatataattattcaatcacacataatttattttagaaaaacatgatatatagtc 11033487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 16653090 - 16653019
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||  ||||||| | |||||||||||||||||| ||| |||||||||| |||||  ||||||||||||    
T  16653090 attaacaaaataaacgatcatataatacttcaatcacacttgatttattttataaaaacatgttatatagtc 16653019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 40990287 - 40990358
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    ||||||||||||| || | |||||||||||||||||  |||||||||||||| | |||  ||||||||||||    
T  40990287 attaacatgataagcgatcatataatacttcaatcagacttaatttattttaaagaaacatgttatatagtc 40990358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 36308984 - 36308927
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||||||||||||||  | |||||||||||||||||| |||| ||||||||| |||||    
T  36308984 attaacatgataaacaatcatataatacttcaatcacacttagtttattttataaaaa 36308927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 2248593 - 2248525
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatata 296  Q
    ||||||||  |||||||| |||||||| | ||||||| ||| ||||||||||||||||  |||||||||    
T  2248593 attaacatcgtaaacggtcatataatattccaatcacacttgatttattttagaaaaacatgttatata 2248525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 13405117 - 13405045
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtct 300  Q
    |||||||||||||||| | |||||||| |||||| |    ||||||||||||||||||  |||||||||||||    
T  13405117 attaacatgataaacgatcatataataattcaattatatataatttattttagaaaaacatgttatatagtct 13405045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 1281284 - 1281217
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatat 295  Q
    |||||||| ||||||| | |||||||||||||| ||| ||| |||||| |||||||||  ||||||||    
T  1281284 attaacataataaacgataatataatacttcaaccacacttgatttatcttagaaaaacatgttatat 1281217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 7979281 - 7979210
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    ||||||||||||||   | |||||||||||||||  | ||| ||||||||||||||||  ||||||||||||    
T  7979281 attaacatgataaataatcatataatacttcaattgcacttgatttattttagaaaaacatgttatatagtc 7979210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 33922661 - 33922590
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||| ||||||||||  | |||| ||||||||||||  || ||||||||||| |||||| ||||||||||||    
T  33922661 attatcatgataaacaatcatatcatacttcaatcatactaaatttattttaaaaaaatatgttatatagtc 33922590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 11785667 - 11785597
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagt 298  Q
    |||||||||||||||    |||||||||||||||| |  ||||| |||||||||||||  |||||||||||    
T  11785667 attaacatgataaacaaacatataatacttcaatcgcaattaatgtattttagaaaaacatgttatatagt 11785597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 285
Target Start/End: Original strand, 30479839 - 30479877
Alignment:
Q  247 atataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  30479839 atataatacttcaatcacacttgatttattttagaaaaa 30479877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 285
Target Start/End: Complemental strand, 34633859 - 34633821
Alignment:
Q  247 atataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  34633859 atataatacttcaatcacacttgatttattttagaaaaa 34633821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 4247620 - 4247677
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||| ||||||||||| | ||||||||||| |||||  |||||||||||||| |||||    
T  4247620 attagcatgataaacgatcatataatacttaaatcatacttaatttattttaaaaaaa 4247677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 362
Target Start/End: Original strand, 4247729 - 4247758
Alignment:
Q  333 ccttcccctcctaaaccttcaatccaaaca 362  Q
    ||||||||||||||||||||||||||||||    
T  4247729 ccttcccctcctaaaccttcaatccaaaca 4247758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 10028241 - 10028184
Alignment:
Q  238 taaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatat 295  Q
    |||||| | |||||| ||||||| ||| |||||||||||||| |||||| ||||||||    
T  10028241 taaacgatcatataagacttcaaccacacttaatttattttaaaaaaatatgttatat 10028184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 362
Target Start/End: Original strand, 7394663 - 7394699
Alignment:
Q  326 tccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  7394663 tcccctcccttcccctcctaaaccctcaatccaaaca 7394699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 30581916 - 30581964
Alignment:
Q  231 aacatgataaacggttatataatacttcaatcacgcttaatttatttta 279  Q
    ||||||||||| | | |||||||||||||||||| |||||||| |||||    
T  30581916 aacatgataaatgatcatataatacttcaatcacacttaatttgtttta 30581964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 36347644 - 36347715
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||  ||||||||||||    
T  36347644 attaacatgataaacaattatataatacttcaatcacacttaatttattttagaaaaacatgttatatagtc 36347715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 19566924 - 19566995
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    ||||| ||||||||||||  ||||||||||||||||| ||||||||||||||||||||  ||||||||||||    
T  19566924 attaaaatgataaacggtcgtataatacttcaatcacacttaatttattttagaaaaacatgttatatagtc 19566995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 37739994 - 37740051
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||    
T  37739994 attaacatgataaacgatcatataatacttcaatcacacttaatttattttagaaaaa 37740051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 2241551 - 2241480
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||  | ||||||||||||||| || |||||||||||||||||||| || ||||||||||    
T  2241551 attaacatgataaacaatcatataatacttcaattacacttaatttattttagaaaaacgtattatatagtc 2241480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 23748236 - 23748165
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||| | |||||||||||||||||| ||| ||||||||| ||||||  ||||||||||||    
T  23748236 attaacatgataaacgataatataatacttcaatcacacttgatttatttttgaaaaacatgttatatagtc 23748165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 16565912 - 16565850
Alignment:
Q  234 atgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatata 296  Q
    |||||||||| | |||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  16565912 atgataaacgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatata 16565850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 228 - 297
Target Start/End: Original strand, 15224797 - 15224866
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatag 297  Q
    |||||||||||||| | | |||||||||||||||||| ||||||||||| ||||||||  ||||||||||    
T  15224797 attaacatgataaatgatcatataatacttcaatcacacttaatttattctagaaaaacatgttatatag 15224866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 39732832 - 39732889
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||||||||||||||| | |||||||||||||||||  ||||||||||||||||||||    
T  39732832 attaacatgataaacgatcatataatacttcaatcatacttaatttattttagaaaaa 39732889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 300
Target Start/End: Original strand, 8426975 - 8427046
Alignment:
Q  229 ttaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtct 300  Q
    ||||||||||||| | | |||||||||||||||| | ||||||||||||||||||||  |||||||| ||||    
T  8426975 ttaacatgataaatgatcatataatacttcaatcgcacttaatttattttagaaaaacatgttatatcgtct 8427046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 31795875 - 31795929
Alignment:
Q  231 aacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    ||||||||||||| | |||||||||||||||||| |||||||||||||| |||||    
T  31795875 aacatgataaacgatcatataatacttcaatcacacttaatttattttaaaaaaa 31795929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 12541907 - 12541850
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||||||||||||||| | ||||| |||||||||| | ||||||||||||||||||||    
T  12541907 attaacatgataaacgatcatatagtacttcaatcgcacttaatttattttagaaaaa 12541850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 17379953 - 17379897
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaa 284  Q
    |||||||||||||||  | |||||||||| ||||||| |||||||||||||||||||    
T  17379953 attaacatgataaacaatcatataatactccaatcacacttaatttattttagaaaa 17379897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 36566954 - 36567022
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatata 296  Q
    |||||||||||||| | | ||||||||||||||||||  |||||||||| ||||||||  |||||||||    
T  36566954 attaacatgataaatgatcatataatacttcaatcacaattaatttattatagaaaaacatgttatata 36567022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 298
Target Start/End: Complemental strand, 40022492 - 40022441
Alignment:
Q  247 atataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagt 298  Q
    |||||||||||||||||| |||||||||||||| |||||  |||||||||||    
T  40022492 atataatacttcaatcacacttaatttattttacaaaaacatgttatatagt 40022441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 298
Target Start/End: Complemental strand, 41841804 - 41841753
Alignment:
Q  247 atataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagt 298  Q
    |||||||||| ||||||| ||||||||||||||| ||||| |||||||||||    
T  41841804 atataatactccaatcacccttaatttattttaggaaaatatgttatatagt 41841753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 12751947 - 12751885
Alignment:
Q  237 ataaacggttatataatacttcaatcacgcttaatttattttaga-aaaatgtgttatatagt 298  Q
    ||||||| | |||||||||||||||||| ||||| |||||||||| ||||| |||||||||||    
T  12751947 ataaacgatcatataatacttcaatcacacttaaattattttagaaaaaatatgttatatagt 12751885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 28262548 - 28262617
Alignment:
Q  230 taacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||| | || ||||| |||||||||   ||||||||||||||||||  ||||||||||||    
T  28262548 taacatgataaacgatcatgtaatatttcaatcacatgtaatttattttagaaaaacatgttatatagtc 28262617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 6721726 - 6721782
Alignment:
Q  229 ttaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    ||||||||||||| | | |||||||| ||||||||| ||| ||||||||||||||||    
T  6721726 ttaacatgataaatgataatataatatttcaatcacacttgatttattttagaaaaa 6721782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 298
Target Start/End: Complemental strand, 9427107 - 9427056
Alignment:
Q  247 atataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagt 298  Q
    |||||||||||||||||||| ||||||| ||| ||||||  |||||||||||    
T  9427107 atataatacttcaatcacgcataatttagttttgaaaaacatgttatatagt 9427056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 285
Target Start/End: Complemental strand, 7681370 - 7681332
Alignment:
Q  247 atataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  7681370 atataatacttcaatcacacttaatttattttacaaaaa 7681332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 17379890 - 17379852
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  17379890 cctcccctcccttcccctcctaaaccctcaatccaaaca 17379852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 18811467 - 18811413
Alignment:
Q  230 taacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaa 284  Q
    |||||||||||||  | |||||||| ||||||||| |||||||||||||| ||||    
T  18811467 taacatgataaacaatcatataatatttcaatcacacttaatttattttaaaaaa 18811413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 362
Target Start/End: Original strand, 31795968 - 31796002
Alignment:
Q  328 cccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||| ||||||||||||||||||||||||||||||    
T  31795968 ccctcccttcccctcctaaaccttcaatccaaaca 31796002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 35736219 - 35736181
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  35736219 cctcccctcccttcccctcctaaaccctcaatccaaaca 35736181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 39821810 - 39821744
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttata 294  Q
    |||||||||||||| | |  |||||||||| |||| | ||||||||||||||||||||  |||||||    
T  39821810 attaacatgataaatgatcttataatacttaaatcgcacttaatttattttagaaaaacatgttata 39821744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 285
Target Start/End: Complemental strand, 41778895 - 41778857
Alignment:
Q  247 atataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  41778895 atataatacttcaatcacacttaatttattttaaaaaaa 41778857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 270
Target Start/End: Original strand, 42316867 - 42316909
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaa 270  Q
    |||||||||||||||| | |||||||||||||||||| |||||    
T  42316867 attaacatgataaacgatcatataatacttcaatcacacttaa 42316909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 9631701 - 9631652
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattt 277  Q
    |||||||||||||||| | ||||||||||||| |||| ||| ||||||||    
T  9631701 attaacatgataaacgataatataatacttcattcacacttgatttattt 9631652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 31061560 - 31061601
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaacatga 365  Q
    |||||||| | ||||||||||||||| |||||||||||||||    
T  31061560 cctcccctccattcccctcctaaaccctcaatccaaacatga 31061601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 32503281 - 32503232
Alignment:
Q  247 atataatacttcaatcacgcttaatttattttagaaaaatgtgttatata 296  Q
    |||||||| || |||||  ||||||||||||||||||||| |||||||||    
T  32503281 atataatattttaatcatacttaatttattttagaaaaatatgttatata 32503232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 362
Target Start/End: Original strand, 36046398 - 36046439
Alignment:
Q  321 aaacctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    ||||||||||| |||||||||| |||||| ||||||||||||    
T  36046398 aaacctcccctcccttcccctcataaaccctcaatccaaaca 36046439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 17334012 - 17334048
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaa 360  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  17334012 cctccccttccttcccctcctaaaccctcaattcaaa 17334048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 29525853 - 29525893
Alignment:
Q  245 ttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    ||||||||||||||||||||  ||||||||||||| |||||    
T  29525853 ttatataatacttcaatcacatttaatttattttaaaaaaa 29525893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 35736297 - 35736245
Alignment:
Q  247 atataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    ||||||||||||| |||| ||| ||||||||||||||||  |||||| |||||    
T  35736297 atataatacttcagtcacacttcatttattttagaaaaacatgttatctagtc 35736245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 226 - 307
Target Start/End: Original strand, 40095034 - 40095116
Alignment:
Q  226 aaattaacatgataaacggttatataatacttcaatcacgcttaatttattttag-aaaaatgtgttatatagtctttaattt 307  Q
    |||||||||||||||||| | |||||||||||||||||| ||||||||||||||| |||||  ||||||||||||| ||||||    
T  40095034 aaattaacatgataaacgatcatataatacttcaatcacacttaatttattttagaaaaaacatgttatatagtctgtaattt 40095116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 50744384 - 50744455
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||| | |||||||||||||||||| |||||||||||||||| |||  ||||||||||||    
T  50744384 attaacatgataaacgatcatataatacttcaatcacacttaatttattttagagaaacctgttatatagtc 50744455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 307
Target Start/End: Original strand, 44211011 - 44211087
Alignment:
Q  231 aacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaattt 307  Q
    ||||||||||||| | |||||||||||||||||| ||||||||||||||||||||   ||||||||| || ||||||    
T  44211011 aacatgataaacgatcatataatacttcaatcacacttaatttattttagaaaaacacgttatatagactgtaattt 44211087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 10392013 - 10391942
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||||| ||||||||||| ||||||  |||||||||||||||||||  ||| ||||||||    
T  10392013 attaacatgataaacggtcatataatactttaatcacaattaatttattttagaaaaacatgtaatatagtc 10391942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 30010473 - 30010402
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||| ||||||| | |||||||||||||| ||| ||||||||||||||||||||  ||||||||||||    
T  30010473 attaacattataaacgatcatataatacttcaaccacacttaatttattttagaaaaacatgttatatagtc 30010402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 32951421 - 32951492
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||| |  ||||||||||||||||| ||||||||||||||||||||  |||| |||||||    
T  32951421 attaacatgataaacgatcgtataatacttcaatcacacttaatttattttagaaaaacatgttctatagtc 32951492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 38509998 - 38510068
Alignment:
Q  229 ttaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||| |||||||| | |||||||||||||||||| ||| ||||||||||||||||  ||||||||||||    
T  38509998 ttaacacgataaacgataatataatacttcaatcacacttgatttattttagaaaaacatgttatatagtc 38510068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 41676420 - 41676363
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||||||||||||||| | |||||||||| ||||||| ||||||||||||||||||||    
T  41676420 attaacatgataaacgatcatataatactacaatcacacttaatttattttagaaaaa 41676363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 361
Target Start/End: Original strand, 2859054 - 2859169
Alignment:
Q  247 atataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaatttnnnnnnnnnnnncaaa-cctccccttccttcccctccta 345  Q
    |||||||||||||||||| ||||||||||||| ||||||  ||||||||||||  ||||||             ||| |||||||| |||||||||||||    
T  2859054 atataatacttcaatcacacttaatttatttttgaaaaacatgttatatagtccgtaatttaaaaaataaaagtaaaccctcccctcccttcccctccta 2859153  T
Q  346 aaccttcaatccaaac 361  Q
    ||||||||||||||||    
T  2859154 aaccttcaatccaaac 2859169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 8529940 - 8529861
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaattt 307  Q
    ||||||||| |||||| | |||||||||||||||||| |||||||||||| | |||||  ||||||||||| | ||||||    
T  8529940 attaacatggtaaacgatcatataatacttcaatcacacttaatttatttaaaaaaaacatgttatatagtttgtaattt 8529861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 35349565 - 35349636
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||  | ||||||||||||||| || |||| |||||||||||||||  ||||||||||||    
T  35349565 attaacatgataaacaatcatataatacttcaataacccttagtttattttagaaaaaaatgttatatagtc 35349636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 45585788 - 45585859
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||| | ||||| |||||| ||||| |||||||||||||| |||||  ||||||||||||    
T  45585788 attaacatgataaacgatcatatagtacttcgatcacacttaatttattttaaaaaaacatgttatatagtc 45585859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 51597809 - 51597738
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    ||||| |||||||||  | |||||||||||||||||| |||||||||||||| |||||  ||||||||||||    
T  51597809 attaagatgataaacaatcatataatacttcaatcacacttaatttattttaaaaaaacatgttatatagtc 51597738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 49946691 - 49946763
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtct 300  Q
    ||||||||||||||   | ||||||||||||||||||  ||||||||||||| |||||  |||||||||||||    
T  49946691 attaacatgataaattatcatataatacttcaatcacatttaatttattttaaaaaaacatgttatatagtct 49946763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 26940946 - 26941012
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttata 294  Q
    ||||||||  ||||| || |||||||||||||||||| ||| ||||||||||||||||  |||||||    
T  26940946 attaacatcgtaaacagtcatataatacttcaatcacacttgatttattttagaaaaacatgttata 26941012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 36285677 - 36285734
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||||||||||||||| | |||||||||||||||||| ||| || ||||||| |||||    
T  36285677 attaacatgataaacgatcatataatacttcaatcacacttgatatattttaaaaaaa 36285734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 41498545 - 41498489
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaa 284  Q
    |||||||||||||||| | |||||||||||||||||| ||||| ||||  |||||||    
T  41498545 attaacatgataaacgatcatataatacttcaatcacacttaacttatcgtagaaaa 41498489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 26324058 - 26324020
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  26324058 cctcccctcccttcccctcctaaaccctcaatccaaaca 26324020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 30010376 - 30010338
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  30010376 cctcccctcccttcccctcctaaaccctcaatccaaaca 30010338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 40094977 - 40094939
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||||||||||||||||||||| || |||||||||    
T  40094977 cctccccttccttcccctcctaaaccctccatccaaaca 40094939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 42230679 - 42230629
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttatttt 278  Q
    |||||||| ||||||  | |||||||||||||||||| |||||||||||||    
T  42230679 attaacataataaacaatcatataatacttcaatcacacttaatttatttt 42230629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 7444636 - 7444579
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||||||| ||||||| | |||||||||||||||||| |||  |||| ||||||||||    
T  7444636 attaacataataaacgatcatataatacttcaatcacacttggtttaatttagaaaaa 7444579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 42742416 - 42742469
Alignment:
Q  231 aacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaa 284  Q
    |||||||||||  || ||||| |||||||||||| |||||||||||||| ||||    
T  42742416 aacatgataaatagtcatatagtacttcaatcacacttaatttattttaaaaaa 42742469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 47261392 - 47261343
Alignment:
Q  246 tatataatacttcaatcacgcttaatttattttagaaaaatgtgttatat 295  Q
    |||||||||||| ||||||||||||||| | ||| |||||||| ||||||    
T  47261392 tatataatacttaaatcacgcttaatttttgttaaaaaaatgttttatat 47261343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 6563717 - 6563646
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtct 300  Q
    |||||||||||||| | | |||||||| |||||| || | |||||||||||||||| |  |||||||||||||    
T  6563717 attaacatgataaa-gatcatataataattcaatgacacataatttattttagaaagacatgttatatagtct 6563646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 12234132 - 12234080
Alignment:
Q  247 atataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||| |||| |||||||| ||| ||||||||||||||||  ||||||||||||    
T  12234132 atattatacatcaatcacacttgatttattttagaaaaacatgttatatagtc 12234080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 9857021 - 9856942
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaattt 307  Q
    |||||||| ||||||| | |||||||||||||||||| ||| ||||||||||||||||  |||||||||||| |||||||    
T  9857021 attaacataataaacgatcatataatacttcaatcacacttgatttattttagaaaaacatgttatatagtccttaattt 9856942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 10476169 - 10476112
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    ||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  10476169 attaagatgataaacgattatataatacttcaatcacacttaatttattttagaaaaa 10476112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 13634852 - 13634781
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||| | |||||||| ||||||||| | ||||||||||||||||||  ||||||||||||    
T  13634852 attaacatgataaacgatcatataataattcaatcacacataatttattttagaaaaacatgttatatagtc 13634781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 10072750 - 10072816
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttata 294  Q
    |||||||||||||||| | |||||||||||||||||  ||||||||||||||||||||  |||||||    
T  10072750 attaacatgataaacgatcatataatacttcaatcatacttaatttattttagaaaaacatgttata 10072816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 36392253 - 36392309
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaa 284  Q
    |||||||||||||||| | |||||||||||||||||| |||||| ||||||||||||    
T  36392253 attaacatgataaacgatcatataatacttcaatcacacttaatctattttagaaaa 36392309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 7544277 - 7544206
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||| ||||||  | |||||||||||||||||| ||| ||||||||||||||||  ||||||||||||    
T  7544277 attaacataataaacaatcatataatacttcaatcacacttgatttattttagaaaaacatgttatatagtc 7544206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 26415034 - 26414963
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    ||||||||||||||||   |||||||||||||||||| |||||| |||||||||||||  ||| ||||||||    
T  26415034 attaacatgataaacgaccatataatacttcaatcacacttaatatattttagaaaaacatgtcatatagtc 26414963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 307
Target Start/End: Original strand, 9798716 - 9798794
Alignment:
Q  229 ttaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaattt 307  Q
    ||||||||| ||||| | ||||||||||||||||||  ||||||||||| |||||||  ||||||||| ||| ||||||    
T  9798716 ttaacatgaaaaacgatcatataatacttcaatcacaattaatttatttaagaaaaacatgttatataatctgtaattt 9798794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 299
Target Start/End: Complemental strand, 16938619 - 16938549
Alignment:
Q  229 ttaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    ||||||||||||| | | |||||||| ||||||||| |||||||||||||||| |||  ||||||||||||    
T  16938619 ttaacatgataaatgatcatataatatttcaatcacacttaatttattttagagaaacatgttatatagtc 16938549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 8502936 - 8503009
Alignment:
Q  226 aaattaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    ||||||| |||||| ||  ||| |||||||||||||||| |||||||||||||||||||   ||||||||||||    
T  8502936 aaattaatatgatacacaattacataatacttcaatcacacttaatttattttagaaaagcatgttatatagtc 8503009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 28279579 - 28279636
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||||||||||||| | | |||||||||||||||||| |||| |||||||||||||||    
T  28279579 attaacatgataaatgatcatataatacttcaatcacacttagtttattttagaaaaa 28279636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 299
Target Start/End: Original strand, 2550459 - 2550526
Alignment:
Q  232 acatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||  | |||||||||||||||||| | ||||||||| ||||||||  ||||||||||||    
T  2550459 acatgataaacaatcatataatacttcaatcacacgtaatttattatagaaaaacatgttatatagtc 2550526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 4373669 - 4373740
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||| | | |||||||| ||||||||| |||||||||||||  |||||  ||||||||||||    
T  4373669 attaacatgataaatgatcatataatatttcaatcacacttaatttatttttaaaaaacttgttatatagtc 4373740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 14681610 - 14681531
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaattt 307  Q
    ||||||||||||||| || ||||| | ||||||||||  ||||||||||||| |||||  ||||||||| ||| ||||||    
T  14681610 attaacatgataaacagtcatatattccttcaatcacatttaatttattttaaaaaaacatgttatataatctgtaattt 14681531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 299
Target Start/End: Complemental strand, 22022963 - 22022920
Alignment:
Q  256 ttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||    
T  22022963 ttcaatcacacttaatttattttagaaaaatatgttatatagtc 22022920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 37607035 - 37606957
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaattt 307  Q
    |||||||||||||||| | ||||||||||||||||||   |||||||||||| |||||  | |||||||||| |||||||    
T  37607035 attaacatgataaacgatcatataatacttcaatcacatataatttattttaaaaaaacat-ttatatagtccttaattt 37606957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 11757018 - 11756948
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagt 298  Q
    |||||||| ||||| | | ||||||||||| |||||| |||||||||||||||| |||  |||||||||||    
T  11757018 attaacatcataaatgatcatataatactttaatcacacttaatttattttagagaaacatgttatatagt 11756948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 17024327 - 17024393
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttata 294  Q
    |||||||||| ||||| | ||||||||||||||||   ||||||||||||||||||||  |||||||    
T  17024327 attaacatgaaaaacgatcatataatacttcaatcgtacttaatttattttagaaaaacatgttata 17024393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 37551548 - 37551498
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttatttt 278  Q
    |||||||||||||||| | |||||||||||||||||| | |||||||||||    
T  37551548 attaacatgataaacgatcatataatacttcaatcacacataatttatttt 37551498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 37654378 - 37654328
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttatttt 278  Q
    |||||||||||||||| | |||||||||||||||||| | |||||||||||    
T  37654378 attaacatgataaacgatcatataatacttcaatcacacataatttatttt 37654328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 37779244 - 37779187
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||||||||||||||| | ||||||||||||||||||   |||||||||||| |||||    
T  37779244 attaacatgataaacgatcatataatacttcaatcacatataatttattttaaaaaaa 37779187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 42681592 - 42681523
Alignment:
Q  230 taacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||| | | ||||||||||| |||||| || || ||||||||||||||  ||||||||||||    
T  42681592 taacatgataaatgatcatataatactttaatcacactaaaattattttagaaaaacatgttatatagtc 42681523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 285
Target Start/End: Original strand, 20513570 - 20513609
Alignment:
Q  246 tatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  20513570 tatataatacttcaatcacacttaatttattttataaaaa 20513609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 286
Target Start/End: Complemental strand, 34980948 - 34980893
Alignment:
Q  231 aacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaat 286  Q
    ||||||||||| | ||||||||||||||||  || |||||||||||||| ||||||    
T  34980948 aacatgataaatgattatataatacttcaaaaacacttaatttattttaaaaaaat 34980893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 307
Target Start/End: Complemental strand, 40815433 - 40815359
Alignment:
Q  232 acatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaattt 307  Q
    |||||||||||  |||||||||| ||||||||| |||  ||||||||| |||||  ||||||||||||| ||||||    
T  40815433 acatgataaacaattatataatatttcaatcacacttt-tttattttataaaaacatgttatatagtctgtaattt 40815359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Original strand, 2550552 - 2550590
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  2550552 cctcccctcccttcccctcctaaaccctcaatccaaaca 2550590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Original strand, 7544336 - 7544374
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||||||||||||||||||||| || |||||||||    
T  7544336 cctccccttccttcccctcctaaaccctccatccaaaca 7544374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 13634755 - 13634717
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  13634755 cctcccctcccttcccctcctaaaccctcaatccaaaca 13634717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Original strand, 13634911 - 13634949
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  13634911 cctcccctcccttcccctcctaaaccctcaatccaaaca 13634949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 14245132 - 14245094
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  14245132 cctcccctcccttcccctcctaaaccctcaatccaaaca 14245094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Original strand, 14245246 - 14245284
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  14245246 cctcccctcccttcccctcctaaaccctcaatccaaaca 14245284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Original strand, 15986824 - 15986862
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  15986824 cctcctcttccttcccctcctaaaccctcaatccaaaca 15986862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 16938523 - 16938485
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  16938523 cctcccctcccttcccctcctaaaccctcaatccaaaca 16938485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 362
Target Start/End: Complemental strand, 34980850 - 34980816
Alignment:
Q  328 cccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||| ||||||||||||||||||||||||||||||    
T  34980850 ccctcccttcccctcctaaaccttcaatccaaaca 34980816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 36363173 - 36363103
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagt 298  Q
    |||| ||||||||||  | |||||| |||||||| || ||| ||||||||||||||||  |||||||||||    
T  36363173 attagcatgataaacaatgatataaaacttcaatgacacttgatttattttagaaaaacatgttatatagt 36363103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 285
Target Start/End: Complemental strand, 10650546 - 10650513
Alignment:
Q  252 atacttcaatcacgcttaatttattttagaaaaa 285  Q
    ||||||||||||| ||||||||||||||||||||    
T  10650546 atacttcaatcacacttaatttattttagaaaaa 10650513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 39966074 - 39966123
Alignment:
Q  247 atataatacttcaatcacgcttaatttattttagaaaaatgtgttatata 296  Q
    |||||||| |||||||||| ||||||||||| | |||||| |||||||||    
T  39966074 atataataattcaatcacgtttaatttatttaaaaaaaatatgttatata 39966123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 362
Target Start/End: Original strand, 8551628 - 8551656
Alignment:
Q  334 cttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||||||||||||||||||||||||    
T  8551628 cttcccctcctaaaccttcaatccaaaca 8551656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 362
Target Start/End: Complemental strand, 14681508 - 14681476
Alignment:
Q  330 cttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||||||||||||||| ||||||||||||    
T  14681508 cttccttcccctcctaaaccctcaatccaaaca 14681476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 29002309 - 29002373
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgtta 292  Q
    |||||||||||||||| | |||||||||| ||||||   ||||||||||||  |||||| |||||    
T  29002309 attaacatgataaacgatcatataatactacaatcatatttaatttatttttaaaaaatttgtta 29002373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 22163212 - 22163269
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||    
T  22163212 attaacatgataaacgatcatataatacttcaatcacacttaatttattttagaaaaa 22163269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 22221920 - 22221977
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||    
T  22221920 attaacatgataaacgatcatataatacttcaatcacacttaatttattttagaaaaa 22221977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 297
Target Start/End: Original strand, 33655211 - 33655280
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatag 297  Q
    |||||||||||||| | | |||||||||||||||||| ||||||||||||||||||||  ||||||||||    
T  33655211 attaacatgataaatgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatag 33655280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 24970268 - 24970336
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatata 296  Q
    |||||| ||||||||| | |||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  24970268 attaacttgataaacgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatata 24970336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 40572337 - 40572408
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||| ||| ||||||||||| ||||||||||||||||||||||| |||  | ||||||||||    
T  40572337 attaacatgataaaaggtcatataatactttaatcacgcttaatttattttagagaaacatattatatagtc 40572408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 41497060 - 41497131
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||| | | ||||||| |||||||||| ||||||||||||||||||||  ||||||||||||    
T  41497060 attaacatgataaatgatcatataattcttcaatcacacttaatttattttagaaaaacatgttatatagtc 41497131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 45940759 - 45940831
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtct 300  Q
    |||||||| |||| || | ||||||||||||||| ||  |||||||||||||||||||| |||||||||||||    
T  45940759 attaacataataagcgataatataatacttcaattacatttaatttattttagaaaaatatgttatatagtct 45940831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 25887333 - 25887262
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    ||||| |||||||||  | |||||||||| ||||||| ||||||||||||||||||||  ||||||||||||    
T  25887333 attaatatgataaacaatcatataatactccaatcacacttaatttattttagaaaaacatgttatatagtc 25887262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 298
Target Start/End: Original strand, 34228440 - 34228491
Alignment:
Q  247 atataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagt 298  Q
    |||||||||||||||||| ||||||||||||||||||||  |||||||||||    
T  34228440 atataatacttcaatcacacttaatttattttagaaaaacatgttatatagt 34228491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 17853009 - 17852955
Alignment:
Q  231 aacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    ||||||||||||| | ||||||||| |||||||| ||||||||||||||||||||    
T  17853009 aacatgataaacgatcatataatacctcaatcacacttaatttattttagaaaaa 17852955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 34235110 - 34235167
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    ||||| |||||||||  | |||||||||||||||||| ||||||||||||||||||||    
T  34235110 attaatatgataaacaatcatataatacttcaatcacacttaatttattttagaaaaa 34235167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 40196654 - 40196703
Alignment:
Q  247 atataatacttcaatcacgcttaatttattttagaaaaatgtgttatata 296  Q
    |||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  40196654 atataatacttcaatcacacttaatttattttagaaaaacatgttatata 40196703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 26365907 - 26365839
Alignment:
Q  230 taacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagt 298  Q
    |||||||| ||||  | |||||||||||||||||| | || |||||||||||||||| |||||||||||    
T  26365907 taacatgagaaacaatcatataatacttcaatcacacctagtttattttagaaaaatatgttatatagt 26365839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 42306456 - 42306404
Alignment:
Q  247 atataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||| |||||||||||||||||||||||||| |  ||||||||||||    
T  42306456 atataatactccaatcacgcttaatttattttagaaatacatgttatatagtc 42306404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 43230377 - 43230309
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatata 296  Q
    |||||||||||||||| |  |||||| |||||||| | ||||||||||||||||||||  |||||||||    
T  43230377 attaacatgataaacgatcgtataattcttcaatcgcacttaatttattttagaaaaacatgttatata 43230309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 18063667 - 18063722
Alignment:
Q  231 aacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaat 286  Q
    ||||||||||| | | |||||||||||||||||| |||||||||||||| ||||||    
T  18063667 aacatgataaatgatcatataatacttcaatcacacttaatttattttaaaaaaat 18063722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 299
Target Start/End: Original strand, 37417740 - 37417807
Alignment:
Q  232 acatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||| | |||||||||||||||||| ||||| ||| ||| ||||||  ||||||||||||    
T  37417740 acatgataaacgatcatataatacttcaatcacacttaacttaattttgaaaaacatgttatatagtc 37417807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 47390997 - 47390926
Alignment:
Q  228 attaacatgataaacg-gttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagt 298  Q
    |||||||||||||||  || ||||||||||||||||||  ||||| |||||||||||||  |||||||||||    
T  47390997 attaacatgataaacaagtcatataatacttcaatcacaattaatgtattttagaaaaacatgttatatagt 47390926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 298
Target Start/End: Original strand, 1051605 - 1051671
Alignment:
Q  232 acatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagt 298  Q
    |||||||||||  | ||||||| |||||||||| ||||||||||||||||||||   ||||||||||    
T  1051605 acatgataaacaatcatataatgcttcaatcacacttaatttattttagaaaaacaggttatatagt 1051671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 23116366 - 23116420
Alignment:
Q  231 aacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    ||||||||||| | |||||||||||||||||||| |||||||| ||||| |||||    
T  23116366 aacatgataaatgattatataatacttcaatcacacttaattttttttaaaaaaa 23116420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 325 - 362
Target Start/End: Complemental strand, 28074146 - 28074109
Alignment:
Q  325 ctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  28074146 ctcccctcccttcccctcctaaaccttcaatccaaaca 28074109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 362
Target Start/End: Original strand, 39855987 - 39856103
Alignment:
Q  247 atataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaatttnnnnnnnnnnnncaaacc-tccccttccttcccctccta 345  Q
    ||||||||||| | |||| ||||||||||||||||||||  ||||||||||||  ||||||             ||||| |||||| |||||||||||||    
T  39855987 atataatacttaagtcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaaaccctcccctcccttcccctccta 39856086  T
Q  346 aaccttcaatccaaaca 362  Q
    |||| ||||||||||||    
T  39856087 aaccctcaatccaaaca 39856103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 42087136 - 42087068
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatata 296  Q
    |||||| ||| ||||| |||||||||| |||||| || |||||||||||||| || ||| |||||||||    
T  42087136 attaacgtgacaaacgattatataataattcaattacacttaatttattttaaaataatatgttatata 42087068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 10315774 - 10315719
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaa 283  Q
    ||||||| |||||||| |||||||||||||||||||| ||   |||||||||||||    
T  10315774 attaacaagataaacgattatataatacttcaatcacactgggtttattttagaaa 10315719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 13771049 - 13771120
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||  | |||||| |||  |||||| |||||||||||||| |||||  ||||||||||||    
T  13771049 attaacatgataaacaatgatataacactcgaatcacacttaatttattttaaaaaaacatgttatatagtc 13771120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 31571571 - 31571614
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaat 271  Q
    |||||||||||||||  |||||||||||||||||||| ||||||    
T  31571571 attaacatgataaacaattatataatacttcaatcacacttaat 31571614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Original strand, 28074308 - 28074346
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  28074308 cctccccttccttcctctcctaaaccctcaatccaaaca 28074346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Original strand, 36267753 - 36267791
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  36267753 cctcccctcccttcccctcctaaaccctcaatccaaaca 36267791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 37925885 - 37925847
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  37925885 cctcccctcccttcccctcctaaaccctcaatccaaaca 37925847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 48152099 - 48152055
Alignment:
Q  250 taatacttcaatcacgcttaatttattttagaaaaatgtgttata 294  Q
    ||||||||||||||| || |||||||||||||||||  |||||||    
T  48152099 taatacttcaatcacactaaatttattttagaaaaacatgttata 48152055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 31849251 - 31849179
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtct 300  Q
    |||||| ||||||||  | |||||||||||||||||| ||| ||||||||||||||||| |||||||||||||    
T  31849251 attaacgtgataaacaataatataatacttcaatcacacttgatttattttagaaaaatatgttatatagtct 31849179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 5585405 - 5585476
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||| ||||||| ||||| |||| ||||||||| ||||||||||||||||||||  ||||||||||||    
T  5585405 attaacataataaacgattatacaatatttcaatcacacttaatttattttagaaaaacatgttatatagtc 5585476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 2892708 - 2892777
Alignment:
Q  230 taacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||  | |||||||| ||||||||| || ||||||||||||||||| |||||||||||||    
T  2892708 taacatgataaacaatcatataatatttcaatcacactaaatttattttagaaaaacgtgttatatagtc 2892777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 4097615 - 4097672
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||||||||||||||| | |||||||||||||||||| ||||||||||||| ||||||    
T  4097615 attaacatgataaacgatcatataatacttcaatcacacttaatttattttggaaaaa 4097672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 19278141 - 19278212
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||| | |||| ||||||||||||  || |||||||||||||||||  ||||||||||||    
T  19278141 attaacatgataaacgatcatatgatacttcaatcagactaaatttattttagaaaaacatgttatatagtc 19278212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 30487408 - 30487479
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||  | |||||||||||||||||| ||| |||||||||| |||||  ||||||||||||    
T  30487408 attaacatgataaacaataatataatacttcaatcacacttgatttattttataaaaacatgttatatagtc 30487479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 33236092 - 33236021
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||  | ||||||| |||||||||  ||||||||||||||||||||  ||||||||||||    
T  33236092 attaacatgataaacaatcatataattcttcaatcagtcttaatttattttagaaaaacatgttatatagtc 33236021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 13583859 - 13583781
Alignment:
Q  229 ttaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaattt 307  Q
    ||||||| ||||| | | |||||||| ||||||||| ||||||||||||||||||||  ||||||||| ||| ||||||    
T  13583859 ttaacataataaatgatcatataatatttcaatcacacttaatttattttagaaaaacatgttatataatctgtaattt 13583781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 2893752 - 2893699
Alignment:
Q  247 atataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtct 300  Q
    ||||||||| |||||||| ||||||||||||||||||||  |||||||||||||    
T  2893752 atataatacatcaatcacacttaatttattttagaaaaacatgttatatagtct 2893699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 25741542 - 25741477
Alignment:
Q  234 atgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||| | |||||| |||||| ||||||||||||||||||| |||||  ||||||||||||    
T  25741542 atgataaacgatcatataaaacttcagtcacgcttaatttattttaaaaaaacatgttatatagtc 25741477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 285
Target Start/End: Original strand, 5381304 - 5381343
Alignment:
Q  246 tatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  5381304 tatataatacttcaatcacgcttaatttattttaaaaaaa 5381343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 9721182 - 9721144
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  9721182 cctcccctcccttcccctcctaaaccttcaatccaaaca 9721144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 12811108 - 12811162
Alignment:
Q  253 tacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaattt 307  Q
    |||||||||||| ||||||||||||||||||||  | ||||||||||| ||||||    
T  12811108 tacttcaatcacacttaatttattttagaaaaacatattatatagtctctaattt 12811162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 23091039 - 23091001
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  23091039 cctcccctcccttcccctcctaaaccttcaatccaaaca 23091001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 21606947 - 21607004
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||||||||||||||| |  |||||||||||| |||| ||| ||||||||||||||||    
T  21606947 attaacatgataaacgatcgtataatacttcagtcacactttatttattttagaaaaa 21607004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 34176476 - 34176408
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatata 296  Q
    |||||||| ||||||| |  ||||||||| ||||||| ||| ||||||||||||||||  |||||||||    
T  34176476 attaacataataaacgatcgtataatactgcaatcacacttgatttattttagaaaaacatgttatata 34176408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 277
Target Start/End: Complemental strand, 32926784 - 32926737
Alignment:
Q  230 taacatgataaacggttatataatacttcaatcacgcttaatttattt 277  Q
    |||||||||||| | | |||||||||||||||||| ||||||||||||    
T  32926784 taacatgataaatgatcatataatacttcaatcacacttaatttattt 32926737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 6034201 - 6034247
Alignment:
Q  254 acttcaatcacgcttaatttattttagaaaaatgtgttatatagtct 300  Q
    ||||||||||| ||||||||||||||||||||  ||||||| |||||    
T  6034201 acttcaatcacacttaatttattttagaaaaacatgttatacagtct 6034247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 9719075 - 9719037
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  9719075 cctcccctcccttcccctcctaaaccctcaatccaaaca 9719037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 14515517 - 14515479
Alignment:
Q  324 cctccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  14515517 cctcccctcccttcccctcctaaaccctcaatccaaaca 14515479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 14515609 - 14515559
Alignment:
Q  231 aacatgataaacggttatataatacttcaatcacgcttaatttattttaga 281  Q
    ||||||||||| | | ||||||||||||| |||| ||||||||||||||||    
T  14515609 aacatgataaatgataatataatacttcattcacacttaatttattttaga 14515559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 1300761 - 1300692
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttat-tttagaaaaatgtgttatata 296  Q
    |||||| ||||||||  | |||||||||||||||||| |||||||||| || | |||||| |||||||||    
T  1300761 attaacctgataaacaatcatataatacttcaatcacacttaatttatcttgaaaaaaatatgttatata 1300692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 307
Target Start/End: Original strand, 16738101 - 16738178
Alignment:
Q  230 taacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaattt 307  Q
    |||||||||| ||| | ||||||||||| ||| || |||| |||||||||||||||  | ||||||| ||| ||||||    
T  16738101 taacatgatatacgatcatataatacttaaataacacttactttattttagaaaaacattttatataatctgtaattt 16738178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 362
Target Start/End: Complemental strand, 4097273 - 4097241
Alignment:
Q  330 cttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||||||||||||||||| ||||||||||||    
T  4097273 cttccttcccctcctaaaccctcaatccaaaca 4097241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 362
Target Start/End: Complemental strand, 10818271 - 10818235
Alignment:
Q  326 tccccttccttcccctcctaaaccttcaatccaaaca 362  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  10818271 tcccctcccttcccctcctaaaccctcaatccaaaca 10818235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 16399 - 16470
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||||  | |||||||||||||||||| |||||||||||||||| |||  ||||||||||||    
T  16399 attaacatgataaacaatcatataatacttcaatcacacttaatttattttagacaaacatgttatatagtc 16470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 6724 - 6646
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaattt 307  Q
    |||||||| ||||||| | |||||||||||||||||| || |||||||||||||| ||   |||||||||||| ||||||    
T  6724 attaacat-ataaacgatcatataatacttcaatcacactaaatttattttagaataacaagttatatagtctgtaattt 6646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 15404 - 15347
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaa 285  Q
    |||||| ||||||||  | |||||||||||||| ||| ||||||||||||||||||||    
T  15404 attaacgtgataaacaatcatataatacttcaaccacacttaatttattttagaaaaa 15347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 39290 - 39364
Alignment:
Q  228 attaacatgataaacggttatataatacttc---aatcacgcttaatttattttagaaaaatgtgttatatagtc 299  Q
    |||||||||||||| | | ||||||||||||   |||||| ||||||||||||||||||||  ||||| ||||||    
T  39290 attaacatgataaatgatcatataatacttcttcaatcacacttaatttattttagaaaaacatgttacatagtc 39364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 16091 - 16012
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtctttaattt 307  Q
    ||||| |||| ||||  ||||| |||||||||||||| | |||||| ||||| |||||  ||||||||||||| ||||||    
T  16091 attaatatgaaaaacaattataaaatacttcaatcacacataattttttttaaaaaaacatgttatatagtctgtaattt 16012  T

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Target: scaffold0341 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 18910 - 18839
Alignment:
Q  228 attaacatgataaacggttatataatacttcaatcacgcttaatttattttagaaaaatgtgttatatagtct 300  Q
    |||||||||||||| | | |||||||| |||||| || | |||||||||||||||| |  |||||||||||||    
T  18910 attaacatgataaa-gatcatataataattcaatgacacataatttattttagaaagacatgttatatagtct 18839  T

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